Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001486`

染色体: Chr06 坐标: 15828099-15837719 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001486`
名称	SmilChr06G001486
描述	putative calcium-transporting ATPase 11, plasma membrane-type
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	15828099 - 15837719 / `+`

ID 对照

NCBI Gene ID	`LOC130990172`
GeneID	`130990172`
locus_tag	`-`
NCBI Name	`LOC130990172`
原始查询	`SmilChr06G001486`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative calcium-transporting ATPase 11, plasma membrane-type
产物	putative calcium-transporting ATPase 11%2C plasma membrane-type
Arabidopsis	`AT3G57330` (ACA11) autoinhibited Ca2+-ATPase 11 [Source:NCBI gene (formerly Entrezgene);Acc:824900] identity=66; qcov=0.975; evalue=0; confidence=high
Rice	`Os12g0136900` (osACA5) - identity=64.8; qcov=0.983; evalue=0; confidence=high
GO	GO:0005388 (P-type calcium transporter activity); GO:0005516 (calmodulin binding); GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0043231 (intracellular membrane-bounded organelle); GO:0070588 (calcium ion transmembrane transport)
KEGG	-
Pfam	PF00122 (E1-E2_ATPase); PF00689 (Cation_ATPase_C); PF00690 (Cation_ATPase_N); PF00702 (Hydrolase); PF12515 (CaATP_NAI); PF13246 (Cation_ATPase)
InterPro	-
eggNOG	-
NR	GeneID:130990172

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057770372.1`
2	Nucleus	细胞核	0.00000	`XP_057770372.1`
3	Chromosome	染色体	0.00000	`XP_057770372.1`
4	Centromere	着丝粒	0.00000	`XP_057770372.1`
5	Chromatin	染色质	0.00000	`XP_057770372.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:15834184`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr6:15834266`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B108,B22,B36,B81,C79
`Chr6:15834696`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B108,B22,B36,B81,C79
`Chr6:15834994`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B112,C21,C79
`Chr6:15834999`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B108,B22,B36,B81,C79
`Chr6:15835296`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B108,B22,B36,B81,C79
`Chr6:15835479`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C27,D4
`Chr6:15835674`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:15835762`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B3,B73
`Chr6:15835810`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B3,B73
`Chr6:15835944`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B16
`Chr6:15836275`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B108,B22,B36,B81,C79

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770372.1

1074 aa

537

1074

CaATP_NAI

Cation_ATPase_N

E1-E2_ATPase

Cation_ATPase

Hydrolase

Cation_ATPase_C

PF12515 CaATP_NAI 25-67 aa PF00690 Cation_ATPase_N 156-222 aa PF00122 E1-E2_ATPase 277-371 aa PF13246 Cation_ATPase 540-698 aa PF00702 Hydrolase 679-805 aa PF00689 Cation_ATPase_C 876-1049 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770372.1`	Pfam	`PF12515`	CaATP_NAI	Family	25	67	6.3e-18	64.7	Ca2+-ATPase N terminal autoinhibitory domain
`XP_057770372.1`	Pfam	`PF00690`	Cation_ATPase_N	Domain	156	222	1.7e-17	63.5	Cation transporter/ATPase, N-terminus
`XP_057770372.1`	Pfam	`PF00122`	E1-E2_ATPase	Domain	277	371	3e-24	85.5	P-type ATPase actuator domain
`XP_057770372.1`	Pfam	`PF13246`	Cation_ATPase	Family	540	698	1.2e-29	104.1	P-type ATPase, cytoplasmic domain N
`XP_057770372.1`	Pfam	`PF00702`	Hydrolase	Domain	679	805	1.4e-12	49.1	haloacid dehalogenase-like hydrolase
`XP_057770372.1`	Pfam	`PF00689`	Cation_ATPase_C	Family	876	1049	2.1e-43	148.8	Cation transporting ATPase, C-terminus

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057914389.1
GAACGAAGAAATGCGAGGGGCATAAATGAGAACCGCGTGGAGCCGCGTTCCGCTGTCGTACTGTGCACGCTATAACCGTACAACAACTATAAAAATGGCGCTCGTTTGCTCTGCTCCTCAGCTGCTGCAGCTCAGTTTCCATTTTCGTACCGTAAAATGAATGCGTAGTGCCGTACGGCCGTACTCTATATATTCCGATACGGTTGCCAAAATGGAAAGCTTCATTCCGGCGGAGTTCGATTTGAATCACAAAGGCAGCT...

CDS

1 records

下载 CDS FASTA

LOC130990172
ATGCGTAGTGCCGTACGGCCGTACTCTATATATTCCGATACGGTTGCCAAAATGGAAAGCTTCATTCCGGCGGAGTTCGATTTGAATCACAAAGGCAGCTCGGAGGAGGCGCAGAAGAGGTGGCGCGACGCCGTGGGGAAACTAGTGAAGAATCGCCGCCGCCGCTTCCGGTATGCCGCTGATCTTGAGAAGCGGTCAGAAGCGAAGGAGCAGATGAGAAGACTAAGGGAAAACATACGTGTATCTTTTGTTGCTTACAC...

Protein

1 records

下载 Protein FASTA

XP_057770372.1
MRSAVRPYSIYSDTVAKMESFIPAEFDLNHKGSSEEAQKRWRDAVGKLVKNRRRRFRYAADLEKRSEAKEQMRRLRENIRVSFVAYTAALRFIEAGQAMKPPSAVGSGASRSNEQDIASELGTGLKEDARLAGFRIDPDKLATIVSSYDIKTLTKLKGIEGLAARLNVSLDEGVKSEDVATRKNVFGPNLYTEKPSKSFWMFLWEAFQDVTLMILIVCAVVSIGVGLATEGWPKGMYDGVGIILSIFLVVMVTAVSDYKQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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