Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001490`

染色体: Chr06 坐标: 15922133-15924405 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001490`
名称	SmilChr06G001490
描述	cytokinin dehydrogenase 1-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	15922133 - 15924405 / `-`

ID 对照

NCBI Gene ID	`LOC130990174`
GeneID	`130990174`
locus_tag	`-`
NCBI Name	`LOC130990174`
原始查询	`SmilChr06G001490`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cytokinin dehydrogenase 1-like
产物	cytokinin dehydrogenase 1-like
Arabidopsis	`AT2G41510` (CKX1) cytokinin oxidase/dehydrogenase 1 [Source:NCBI gene (formerly Entrezgene);Acc:818749] identity=58.4; qcov=0.996; evalue=0; confidence=high
Rice	`Os01g0940000` (CKX4) - identity=60; qcov=0.907; evalue=0; confidence=high
GO	GO:0009690 (cytokinin metabolic process); GO:0019139 (cytokinin dehydrogenase activity); GO:0071949 (FAD binding)
KEGG	smil00908 (Zeatin biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF01565 (FAD_binding_4); PF09265 (Cytokin-bind)
InterPro	-
eggNOG	-
NR	GeneID:130990174

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.80000	`XP_057770377.1`
2	Vacuole	液泡	0.40000	`XP_057770376.1`
3	Endoplasmic reticulum membrane	内质网膜	0.40000	`XP_057770377.1`
4	Nucleus	细胞核	0.00000	`XP_057770376.1`
5	Chromosome	染色体	0.00000	`XP_057770376.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:15922365`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B139
`Chr6:15922497`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B14,C34
`Chr6:15922731`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B100
`Chr6:15922808`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:15922878`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B47
`Chr6:15922902`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B10
`Chr6:15923016`	`GA`	`G`	1bp_deletion	frameshift_variant	4	B24,B47,C8,C82
`Chr6:15923016`	`GA`	`G`	1bp_deletion	CDS_variant	4	B24,B47,C8,C82
`Chr6:15923068`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B100,B104
`Chr6:15923263`	`GCT`	`G`	2bp_deletion	frameshift_variant	1	B92
`Chr6:15923263`	`GCT`	`G`	2bp_deletion	CDS_variant	1	B92
`Chr6:15923475`	`T`	`TGC`	2bp_insertion	frameshift_variant	1	C37

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770376.1

565 aa

282

565

FAD_binding_4

Cytokin-bind

PF01565 FAD_binding_4 72-208 aa PF09265 Cytokin-bind 273-547 aa

XP_057770377.1

563 aa

282

563

FAD_binding_4

Cytokin-bind

PF01565 FAD_binding_4 72-216 aa PF09265 Cytokin-bind 248-336 aa PF09265 Cytokin-bind 352-545 aa

XP_057770378.1

540 aa

270

540

FAD_binding_4

Cytokin-bind

PF01565 FAD_binding_4 72-216 aa PF09265 Cytokin-bind 248-522 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770376.1`	Pfam	`PF01565`	FAD_binding_4	Domain	72	208	2.2e-14	54.1	FAD binding domain
`XP_057770376.1`	Pfam	`PF09265`	Cytokin-bind	Domain	273	547	4.5e-111	371.5	Cytokinin dehydrogenase 1, FAD and cytokinin binding
`XP_057770377.1`	Pfam	`PF01565`	FAD_binding_4	Domain	72	216	3e-17	63.4	FAD binding domain
`XP_057770377.1`	Pfam	`PF09265`	Cytokin-bind	Domain	248	336	4.6e-108	361.6	Cytokinin dehydrogenase 1, FAD and cytokinin binding
`XP_057770377.1`	Pfam	`PF09265`	Cytokin-bind	Domain	352	545	4.6e-108	361.6	Cytokinin dehydrogenase 1, FAD and cytokinin binding
`XP_057770378.1`	Pfam	`PF01565`	FAD_binding_4	Domain	72	216	2.8e-17	63.4	FAD binding domain
`XP_057770378.1`	Pfam	`PF09265`	Cytokin-bind	Domain	248	522	4.1e-111	371.6	Cytokinin dehydrogenase 1, FAD and cytokinin binding

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057914393.1
TAGCCGAGGGTACTACAGAAAAAGCTATTAGACTGTGAGTAAAGTGGGATGGAAAAGATAGAATATTTCTTCTCCATTATTTTTCGGCTCGTGTTACATTAATTAGTACATCAAGAAATGATAGGCAAAATACTACAGAGACCTTCCCTTTATATTCTCTTGCACCCTTCTCTTGATCACCAGTCTATTAACACCATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGATATGTTCATCTCACAATCTAACAAAC...

XM_057914395.1
ATTTCTTCTCCATTATTTTTCGGCTCGTGTTACATTAATTAGTACATCAAGAAATGATAGGCAAAATACTACAGAGACCTTCCCTTTATATTCTCTTGCACCCTTCTCTTGATCACCAGTCTATTAACACCATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGATATGTTCATCTCACAATCTAACAAACTCTTTAGTCTAAAACCTCTAGTTTTCAAAATACTAGTAGTTGTGTTGCTTAGCATCACAATCAA...

CDS

3 records

下载 CDS FASTA

LOC130990174
ATGTTCATCTCACAATCTAACAAACTCTTTAGTCTAAAACCTCTAGTTTTCAAAATACTAGTAGTTGTGTTGCTTAGCATCACAATCAATAGAGAGCCTTGCGCCACCCCGACGCGGCGATCGTTGCTGGAAACGATGCTTTTCGAGGGGAACCTAAGCTTCAACAACATGGAGCATGCATCAAGGGACTTCGGCAATAGATACCATCTCATGCCATTGGCAGTCCTATACCCAAAATCCGCCTCCAACATTGCCCACAT...

Protein

3 records

下载 Protein FASTA

XP_057770376.1
MFISQSNKLFSLKPLVFKILVVVLLSITINREPCATPTRRSLLETMLFEGNLSFNNMEHASRDFGNRYHLMPLAVLYPKSASNIAHIIKHVFEQGLSSDLTVAARGHGHSLEGQALAPGGVVVDMESYKSPAMTFHTAGKHPYVDVSAGELWINILHESVKRGLTPKSWTDYLHLTVGGTLSNAGISGQAFRHGPQINNVYRLRVVTGSLSHAQTQTQKNKFKHFFFLLICAGRGDVVSCSDEENADLFNAVLGGLGQFG...

XP_057770377.1
MFISQSNKLFSLKPLVFKILVVVLLSITINREPCATPTRRSLLETMLFEGNLSFNNMEHASRDFGNRYHLMPLAVLYPKSASNIAHIIKHVFEQGLSSDLTVAARGHGHSLEGQALAPGGVVVDMESYKSPAMTFHTAGKHPYVDVSAGELWINILHESVKRGLTPKSWTDYLHLTVGGTLSNAGISGQAFRHGPQINNVYRLRVVTGRGDVVSCSDEENADLFNAVLGGLGQFGIMTEARIALEPAPTKVKWMRALYSD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器