当前解析结果
SmilChr06G001495| 统一新 Gene ID | SmilChr06G001495 |
|---|---|
| 名称 | SmilChr06G001495 |
| 描述 | glucan endo-1,3-beta-glucosidase, basic isoform-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 16006517 - 16007653 / + |
| NCBI Gene ID | LOC130990570 |
|---|---|
| GeneID | 130990570 |
| locus_tag | - |
| NCBI Name | LOC130990570 |
| 原始查询 | SmilChr06G001495 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | glucan endo-1,3-beta-glucosidase, basic isoform-like |
| 产物 | glucan endo-1%2C3-beta-glucosidase%2C basic isoform-like |
| Arabidopsis | AT3G57260 (BGL2)beta-1,3-glucanase 2 [Source:NCBI gene (formerly Entrezgene);Acc:824893] identity=47.1; qcov=0.948; evalue=5.38e-107; confidence=high |
| Rice | Os01g0940700 (OsPR2)- identity=45.8; qcov=0.894; evalue=1.02e-95; confidence=high |
| GO | GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds); GO:0005886 (plasma membrane); GO:0005975 (carbohydrate metabolic process) |
| KEGG | - |
| Pfam | PF00332 (Glyco_hydro_17) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990570 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 1.00000 | XP_057770774.1 |
| 2 | Cell wall | 细胞壁 | 0.80000 | XP_057770774.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057770774.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057770774.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057770774.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:16006769 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B84 |
Chr6:16006877 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C38 |
Chr6:16006897 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
Chr6:16006902 |
A |
AC |
1bp_insertion | frameshift_variant | 111 | A1,A10,A11,A13,A21,A22,A23,A24,A25,A5,A7,A8,A9,B102,B105,B106,B107,B109,B111,B112,B115,B117,B119,B120,B121,B122,B123,B124,B125,B127,B128,B129,B13,B131,B133,B134,B136,B138,B16,B18,B20,B21,B22,B23,B24,B26,B28,B31,B36,B4,B42,B43,B49,B5,B54,B59,B6,B62,B74,B76,B81,B85,B86,B87,B88,B9,B93,B98,B99,C11,C14,C17,C2,C26,C28,C32,C33,C35,C36,C42,C45,C5,C50,C51,C53,C54,C57,C60,C62,C64,C66,C67,C68,C69,C70,C76,C77,C78,C8,C81,C82,C84,C86,C87,D1,D10,D11,D2,D4,D6,D8 |
Chr6:16006905 |
AG |
A |
1bp_deletion | frameshift_variant | 111 | A1,A10,A11,A13,A21,A22,A23,A24,A25,A5,A7,A8,A9,B102,B105,B106,B107,B109,B111,B112,B115,B117,B119,B120,B121,B122,B123,B124,B125,B127,B128,B129,B13,B131,B133,B134,B136,B138,B16,B18,B20,B21,B22,B23,B24,B26,B28,B31,B36,B4,B42,B43,B49,B5,B54,B59,B6,B62,B74,B76,B81,B85,B86,B87,B88,B9,B93,B98,B99,C11,C14,C17,C2,C26,C28,C32,C33,C35,C36,C42,C45,C5,C50,C51,C53,C54,C57,C60,C62,C64,C66,C67,C68,C69,C70,C76,C77,C78,C8,C81,C82,C84,C86,C87,D1,D10,D11,D2,D4,D6,D8 |
Chr6:16006912 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B108,B22,B36,B81,C79 |
Chr6:16007067 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B14,C34,C75,D3 |
Chr6:16007079 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B14,C34,C75,D3 |
Chr6:16007214 |
C |
CT |
1bp_insertion | frameshift_variant | 1 | A19 |
Chr6:16007214 |
C |
CT |
1bp_insertion | CDS_variant | 1 | A19 |
Chr6:16007285 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B34,C37,C85 |
Chr6:16007289 |
T |
TGG |
2bp_insertion | frameshift_variant | 11 | B113,B122,B132,B133,B140,B8,C3,C39,C48,C7,C77 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057770774.1PF00332
Glyco_hydro_17 37-347 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770774.1 |
Pfam | PF00332 |
Glyco_hydro_17 | Domain | 37 | 347 | 8.3e-100 | 335.1 | Glycosyl hydrolases family 17 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。