当前解析结果
SmilChr06G001496| 统一新 Gene ID | SmilChr06G001496 |
|---|---|
| 名称 | SmilChr06G001496 |
| 描述 | 60S ribosomal protein L44-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 16010690 - 16010983 / - |
| NCBI Gene ID | LOC130990177 |
|---|---|
| GeneID | 130990177 |
| locus_tag | - |
| NCBI Name | LOC130990177 |
| 原始查询 | SmilChr06G001496 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 60S ribosomal protein L44-like |
| 产物 | 60S ribosomal protein L44-like |
| Arabidopsis | AT3G23390 (AT3G23390)Zinc-binding ribosomal protein family protein [Source:NCBI gene (formerly Entrezgene);Acc:821920] identity=90.2; qcov=0.943; evalue=3.14e-48; confidence=medium |
| Rice | Os07g0523100 (OJ1047_A06.130)- identity=89.2; qcov=0.954; evalue=2.21e-48; confidence=medium |
| GO | GO:0003735 (structural constituent of ribosome); GO:0005840 (ribosome); GO:0006412 (translation); GO:0022625 (cytosolic large ribosomal subunit) |
| KEGG | smil03010 (Ribosome - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00935 (Ribosomal_L44) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990177 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057770381.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057770381.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057770381.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057770381.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057770381.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:16010702 |
CAG |
C |
2bp_deletion | frameshift_variant | 1 | A10 |
Chr6:16010702 |
CAG |
C |
2bp_deletion | CDS_variant | 1 | A10 |
Chr6:16010795 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr6:16010797 |
G |
A |
EMS_canonical_SNV | stop_gained | 19 | B108,B130,B24,B33,B36,B49,B55,B61,B79,B81,C1,C20,C26,C47,C58,C65,C78,C79,D5 |
Chr6:16010802 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B28 |
Chr6:16010857 |
C |
CA |
1bp_insertion | frameshift_variant | 4 | B99,C30,C44,C75 |
Chr6:16010857 |
C |
CA |
1bp_insertion | CDS_variant | 4 | B99,C30,C44,C75 |
Chr6:16010858 |
CT |
C |
1bp_deletion | frameshift_variant | 169 | A14,A15,A16,A18,A19,A20,A22,A6,A7,A9,B1,B100,B101,B104,B108,B109,B11,B111,B112,B113,B114,B117,B118,B119,B12,B120,B123,B125,B126,B128,B13,B130,B132,B134,B135,B137,B138,B139,B14,B140,B15,B19,B2,B22,B23,B24,B25,B26,B27,B28,B29,B3,B30,B31,B32,B33,B34,B35,B36,B37,B38,B39,B41,B45,B47,B48,B49,B50,B51,B52,B53,B54,B55,B56,B57,B58,B59,B61,B63,B64,B65,B67,B68,B69,B7,B70,B71,B73,B74,B79,B80,B81,B82,B84,B85,B86,B89,B9,B90,B91,B92,B93,B94,B96,B97,C1,C10,C12,C13,C14,C15,C16,C19,C20,C21,C22,C24,C25,C26,C27,C28,C29,C3,C31,C32,C37,C38,C39,C4,C40,C41,C42,C43,C45,C46,C47,C49,C5,C51,C52,C54,C56,C58,C59,C6,C60,C62,C63,C65,C68,C7,C70,C72,C74,C76,C78,C79,C80,C83,C85,C9,D1,D10,D11,D2,D3,D5,D7,D8 |
Chr6:16010897 |
CT |
C |
1bp_deletion | frameshift_variant | 72 | A1,A11,A18,A2,A21,A23,A25,A3,A4,B10,B102,B107,B122,B126,B127,B129,B131,B132,B133,B140,B16,B17,B20,B29,B3,B33,B40,B41,B44,B46,B53,B58,B66,B67,B69,B73,B75,B8,B83,B87,B91,B94,B95,C10,C15,C16,C21,C22,C23,C3,C33,C36,C38,C39,C41,C44,C48,C52,C55,C58,C7,C71,C72,C73,C74,C77,C82,C84,C87,C9,D7,D9 |
Chr6:16010925 |
G |
GT |
1bp_insertion | frameshift_variant | 2 | B7,C24 |
Chr6:16010925 |
G |
GT |
1bp_insertion | CDS_variant | 2 | B7,C24 |
Chr6:16010950 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B101,B2,B93 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057770381.1PF00935
Ribosomal_L44 19-80 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770381.1 |
Pfam | PF00935 |
Ribosomal_L44 | Family | 19 | 80 | 9.3e-29 | 100.3 | Ribosomal protein L44 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。