Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001500`

染色体: Chr06 坐标: 16064940-16069058 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001500`
名称	SmilChr06G001500
描述	uncharacterized SmilChr06G001500
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	16064940 - 16069058 / `+`

ID 对照

NCBI Gene ID	`LOC130990182`
GeneID	`130990182`
locus_tag	`-`
NCBI Name	`LOC130990182`
原始查询	`SmilChr06G001500`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	UDP-glcnac-adolichol phosphate glcnac-1-p-transferase [Source:NCBI gene (formerly Entrezgene);Acc:818747]; symbol=GPT; hit=AT2G41490; species=arabidopsis; confidence=high
产物	UDP-glcnac-adolichol phosphate glcnac-1-p-transferase [Source:NCBI gene (formerly Entrezgene);Acc:818747]; symbol=GPT; hit=AT2G41490; species=arabidopsis; confidence=high
Arabidopsis	`AT2G41490` (GPT) UDP-glcnac-adolichol phosphate glcnac-1-p-transferase [Source:NCBI gene (formerly Entrezgene);Acc:818747] identity=71.6; qcov=1.03; evalue=0; confidence=high
Rice	`Os07g0661100` (P0496C02.125) - identity=67.8; qcov=0.924; evalue=0; confidence=high
GO	GO:0003975 (UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity); GO:0006487 (protein N-linked glycosylation); GO:0006488 (dolichol-linked oligosaccharide biosynthetic process); GO:0016020 (membrane)
KEGG	smil00510 (N-Glycan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00953 (Glycos_transf_4)
InterPro	-
eggNOG	-
NR	GeneID:130990182

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.80000	`XP_057770389.1`
2	Endoplasmic reticulum membrane	内质网膜	0.80000	`XP_057770389.1`
3	Golgi apparatus	高尔基体	0.60000	`XP_057770389.1`
4	Nucleus	细胞核	0.00000	`XP_057770389.1`
5	Chromosome	染色体	0.00000	`XP_057770389.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:16065006`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B10
`Chr6:16065186`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A14,B120
`Chr6:16065994`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B70
`Chr6:16065995`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C23
`Chr6:16066020`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B13,D2
`Chr6:16066029`	`AT`	`A`	1bp_deletion	frameshift_variant	32	B10,B102,B109,B113,B130,B140,B20,B26,B56,B61,B65,B66,B68,B73,B84,B89,B93,B94,B97,C16,C29,C33,C41,C42,C43,C6,C60,C70,C79,C81,C85,D4
`Chr6:16067461`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A14,A18,B104,B120
`Chr6:16067473`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B78,B82,D11
`Chr6:16067479`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:16067480`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B91,D11
`Chr6:16067660`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr6:16067837`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A10,C40

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770389.1

420 aa

210

420

Glycos_transf_4

PF00953 Glycos_transf_4 154-324 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770389.1`	Pfam	`PF00953`	Glycos_transf_4	Family	154	324	2e-29	103.3	Glycosyl transferase family 4

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057914406.1
GATATTCAGAGAGAGAGAGAAGAGAGAGAGCCGGCGTAGCAATGGCAGCTAGGAAGCGAGCTACAGCAACAACAGTAAAAACTACGGAGCCCGGCCCGGAGAAGGCCAAGTCCGAGAGCCCGTCGGCAGACCCCCCCATTCGACCTGCAAAACTGGCCACGATCCTCAAATTCTTCCTCATATTTTCGATTCCGTATTTTTACTTGATTTTCTCGCACTACAGGATCGATTATGAGCTTAAAAGATCGATCCTGATCAGT...

CDS

1 records

下载 CDS FASTA

LOC130990182
ATGGCAGCTAGGAAGCGAGCTACAGCAACAACAGTAAAAACTACGGAGCCCGGCCCGGAGAAGGCCAAGTCCGAGAGCCCGTCGGCAGACCCCCCCATTCGACCTGCAAAACTGGCCACGATCCTCAAATTCTTCCTCATATTTTCGATTCCGTATTTTTACTTGATTTTCTCGCACTACAGGATCGATTATGAGCTTAAAAGATCGATCCTGATCAGTGCTTTCGTCAGCACCGTAGGGTTCCTCGTTACGGTTAAAAT...

Protein

1 records

下载 Protein FASTA

XP_057770389.1
MAARKRATATTVKTTEPGPEKAKSESPSADPPIRPAKLATILKFFLIFSIPYFYLIFSHYRIDYELKRSILISAFVSTVGFLVTVKMIPVASKYVLRRNLFGYDINKKGTPDGSIKVPESLGIVVAVVFLAVTILFQYFNFTADSNWLVEYNAALASICFITLLGFVDDVLDVPWRVKLVLPSIAALPLLMAYAGHTTIIIPKPLAPYVGLQILDLGWIYKLYMGLLAVFCTNSINIHAGINGLEVGQTVVIACAILIHN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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