当前解析结果
SmilChr06G001502| 统一新 Gene ID | SmilChr06G001502 |
|---|---|
| 名称 | SmilChr06G001502 |
| 描述 | inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At1g60630 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 16069794 - 16071752 / + |
| NCBI Gene ID | LOC130990185 |
|---|---|
| GeneID | 130990185 |
| locus_tag | - |
| NCBI Name | LOC130990185 |
| 原始查询 | SmilChr06G001502 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At1g60630 |
| 产物 | inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At1g60630 |
| Arabidopsis | AT1G68400 (AT1G68400)leucine-rich repeat transmembrane protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:843169] identity=79.6; qcov=0.348; evalue=2.4e-25; confidence=low |
| Rice | Os12g0145900- identity=50.9; qcov=0.355; evalue=3.86e-15; confidence=low |
| GO | GO:0004672 (protein kinase activity); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990185 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057770393.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057770393.1 |
| 3 | Endoplasmic reticulum | 内质网 | 0.40000 | XP_057770391.1 |
| 4 | Mitochondrion | 线粒体 | 0.20000 | XP_057770391.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057770393.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:16070202 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B134,B67,B98,C43,C59 |
Chr6:16070212 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A19,B1,B94 |
Chr6:16070238 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B134,B21,B39,B67 |
Chr6:16070246 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B43,C58 |
Chr6:16070250 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B122,B67,C18 |
Chr6:16070252 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A8 |
Chr6:16070260 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C64,C66 |
Chr6:16070276 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B102,C10,C82 |
Chr6:16070284 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C7,C71 |
Chr6:16070289 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B114,B40,B81,C85,D3 |
Chr6:16070326 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B16,B21,D4 |
Chr6:16070334 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B47 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057770391.1PF07714
PK_Tyr_Ser-Thr 87-149 aa
XP_057770392.1PF07714
PK_Tyr_Ser-Thr 87-146 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770391.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 87 | 149 | 9.1e-06 | 25.9 | Protein tyrosine and serine/threonine kinase |
XP_057770392.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 87 | 146 | 2.2e-05 | 24.6 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。