当前解析结果
SmilChr06G001504| 统一新 Gene ID | SmilChr06G001504 |
|---|---|
| 名称 | SmilChr06G001504 |
| 描述 | zinc finger CCCH domain-containing protein 39 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 16079866 - 16082243 / + |
| NCBI Gene ID | LOC130990186 |
|---|---|
| GeneID | 130990186 |
| locus_tag | - |
| NCBI Name | LOC130990186 |
| 原始查询 | SmilChr06G001504 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zinc finger CCCH domain-containing protein 39 |
| 产物 | zinc finger CCCH domain-containing protein 39 |
| Arabidopsis | AT3G19360 (AT3G19360)Zinc finger (CCCH-type) family protein [Source:NCBI gene (formerly Entrezgene);Acc:821470] identity=42.4; qcov=0.866; evalue=4.99e-67; confidence=medium |
| Rice | Os08g0159800 (OsC3H56)- identity=30.2; qcov=0.86; evalue=6.44e-34; confidence=low |
| GO | GO:0003729 (mRNA binding); GO:0046872 (metal ion binding) |
| KEGG | - |
| Pfam | PF00642 (zf-CCCH); PF14608 (zf-CCCH_2); PF18044 (zf-CCCH_4) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990186 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057770395.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057770395.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057770395.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057770395.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057770395.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:16081048 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A15,B9,C38 |
Chr6:16081050 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B46,B52 |
Chr6:16081135 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B26,C40 |
Chr6:16081196 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B17 |
Chr6:16081196 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B17 |
Chr6:16081202 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B17 |
Chr6:16081216 |
T |
TA |
1bp_insertion | frameshift_variant | 1 | B17 |
Chr6:16081216 |
T |
TA |
1bp_insertion | CDS_variant | 1 | B17 |
Chr6:16081815 |
CA |
C |
1bp_deletion | frameshift_variant | 8 | A24,A4,B112,B31,C13,C21,C79,C86 |
Chr6:16081818 |
CTT |
C |
2bp_deletion | frameshift_variant | 8 | A24,A4,B112,B31,C13,C21,C79,C86 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057770395.1PF00642
zf-CCCH 106-130 aa
PF18044
zf-CCCH_4 109-129 aa
PF14608
zf-CCCH_2 110-130 aa
PF00642
zf-CCCH 167-189 aa
PF18044
zf-CCCH_4 168-189 aa
PF14608
zf-CCCH_2 169-189 aa
PF00642
zf-CCCH 230-254 aa
PF14608
zf-CCCH_2 234-254 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770395.1 |
Pfam | PF00642 |
zf-CCCH | Family | 106 | 130 | 4.2e-24 | 84.6 | Zinc finger C-x8-C-x5-C-x3-H type (and similar) |
XP_057770395.1 |
Pfam | PF18044 |
zf-CCCH_4 | Domain | 109 | 129 | 4.2e-18 | 65.4 | CCCH-type zinc finger |
XP_057770395.1 |
Pfam | PF14608 |
zf-CCCH_2 | Domain | 110 | 130 | 3.3e-09 | 37.6 | RNA-binding, Nab2-type zinc finger |
XP_057770395.1 |
Pfam | PF00642 |
zf-CCCH | Family | 167 | 189 | 4.2e-24 | 84.6 | Zinc finger C-x8-C-x5-C-x3-H type (and similar) |
XP_057770395.1 |
Pfam | PF18044 |
zf-CCCH_4 | Domain | 168 | 189 | 4.2e-18 | 65.4 | CCCH-type zinc finger |
XP_057770395.1 |
Pfam | PF14608 |
zf-CCCH_2 | Domain | 169 | 189 | 3.3e-09 | 37.6 | RNA-binding, Nab2-type zinc finger |
XP_057770395.1 |
Pfam | PF00642 |
zf-CCCH | Family | 230 | 254 | 4.2e-24 | 84.6 | Zinc finger C-x8-C-x5-C-x3-H type (and similar) |
XP_057770395.1 |
Pfam | PF14608 |
zf-CCCH_2 | Domain | 234 | 254 | 3.3e-09 | 37.6 | RNA-binding, Nab2-type zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。