Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001532`

染色体: Chr06 坐标: 16550605-16554359 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001532`
名称	SmilChr06G001532
描述	transcription factor HBP-1b(c38)-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	16550605 - 16554359 / `+`

ID 对照

NCBI Gene ID	`LOC130990211`
GeneID	`130990211`
locus_tag	`-`
NCBI Name	`LOC130990211`
原始查询	`SmilChr06G001532`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transcription factor HBP-1b(c38)-like
产物	transcription factor HBP-1b(c38)-like
Arabidopsis	`AT3G12250` (TGA6) TGACG motif-binding factor 6 [Source:NCBI gene (formerly Entrezgene);Acc:820405] identity=70.1; qcov=0.734; evalue=7.7e-160; confidence=high
Rice	`Os01g0808100` (OsbZIP08) - identity=62.7; qcov=1; evalue=1.91e-177; confidence=high
GO	GO:0003700 (DNA-binding transcription factor activity); GO:0006351 (DNA-templated transcription); GO:0006355 (regulation of DNA-templated transcription); GO:0043565 (sequence-specific DNA binding)
KEGG	smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00170 (bZIP_1); PF07716 (bZIP_2); PF14144 (DOG1)
InterPro	-
eggNOG	-
NR	GeneID:130990211

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057770419.1`
2	Cytoplasm	细胞质	0.40000	`XP_057770419.1`
3	Chromosome	染色体	0.00000	`XP_057770419.1`
4	Centromere	着丝粒	0.00000	`XP_057770419.1`
5	Chromatin	染色质	0.00000	`XP_057770419.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:16552615`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D3
`Chr6:16553214`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B4,C26
`Chr6:16553467`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B4
`Chr6:16553517`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:16553766`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr6:16553865`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A14,B120,B84,C3,D3
`Chr6:16554063`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770419.1

458 aa

229

458

bZIP_2

bZIP_1

DOG1

PF07716 bZIP_2 176-223 aa PF00170 bZIP_1 177-213 aa PF14144 DOG1 261-336 aa

XP_057770420.1

455 aa

228

455

bZIP_2

bZIP_1

DOG1

PF07716 bZIP_2 173-220 aa PF00170 bZIP_1 174-210 aa PF14144 DOG1 258-333 aa

XP_057770421.1

454 aa

227

454

bZIP_2

bZIP_1

DOG1

PF07716 bZIP_2 172-219 aa PF00170 bZIP_1 173-209 aa PF14144 DOG1 257-332 aa

XP_057770422.1

451 aa

226

451

bZIP_2

bZIP_1

DOG1

PF07716 bZIP_2 169-216 aa PF00170 bZIP_1 170-206 aa PF14144 DOG1 254-329 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770419.1`	Pfam	`PF07716`	bZIP_2	Coiled-coil	176	223	2.8e-05	24.8	Basic region leucine zipper
`XP_057770419.1`	Pfam	`PF00170`	bZIP_1	Coiled-coil	177	213	9e-08	32.8	bZIP transcription factor
`XP_057770419.1`	Pfam	`PF14144`	DOG1	Family	261	336	1.3e-30	106.1	Seed dormancy control
`XP_057770420.1`	Pfam	`PF07716`	bZIP_2	Coiled-coil	173	220	2.8e-05	24.8	Basic region leucine zipper
`XP_057770420.1`	Pfam	`PF00170`	bZIP_1	Coiled-coil	174	210	8.9e-08	32.8	bZIP transcription factor
`XP_057770420.1`	Pfam	`PF14144`	DOG1	Family	258	333	1.3e-30	106.1	Seed dormancy control
`XP_057770421.1`	Pfam	`PF07716`	bZIP_2	Coiled-coil	172	219	2.7e-05	24.8	Basic region leucine zipper
`XP_057770421.1`	Pfam	`PF00170`	bZIP_1	Coiled-coil	173	209	8.8e-08	32.9	bZIP transcription factor
`XP_057770421.1`	Pfam	`PF14144`	DOG1	Family	257	332	1.3e-30	106.1	Seed dormancy control
`XP_057770422.1`	Pfam	`PF07716`	bZIP_2	Coiled-coil	169	216	2.7e-05	24.8	Basic region leucine zipper
`XP_057770422.1`	Pfam	`PF00170`	bZIP_1	Coiled-coil	170	206	8.7e-08	32.9	bZIP transcription factor
`XP_057770422.1`	Pfam	`PF14144`	DOG1	Family	254	329	1.3e-30	106.1	Seed dormancy control

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057914438.1
TACAAATAAAAAGTTGGGCAAGAGAAAAAGGCATAGCAAAAATGGCGAGAGGATTTGGGAAAGTGGACACAAATGCTTCAGTTGAAAATGACGCAAATCTTGTCATAATCTGAACGTCACTTCCCTCAATTTCCACAAAACCTATAAATAAACAGATTCCAAAAATATATCATTAAAAAAATGAAATCTTGATTACTATAATCTAACTGGGTCCCTTGAATTTTGTGCTGAAACACATTAATCTCGAGAGGCCCCAGACC...

XM_057914436.1
ATTAAAAAAATGAAATCTTGATTACTATAATCTAACTGGGTCCCTTGAATTTTGTGCTGAAACACATTAATCTCGAGAGGCCCCAGACCAGAATTTCTAGACAAAAATCAAAGTCATAAGATTTTTTCCGGTCAATCGGTTTACCTTTCTCGAGCTCTAAAGATCCAAGCATAAAACTTTCACCTTTATTCTTTAAACCCTGCCTAGAAGGTGTTTGTGAAAAGGGTTCTATGAGATCTTGTTGTTGTGTTGATTTTATT...

CDS

4 records

下载 CDS FASTA

LOC130990211
ATGGCTAGAGCAACTGTAAATATTGGTGGTGATGCAAATAGAAGAGCAAGTTCAGGGATGCCAAGCTTTATTTCTCAAGCACCACTTTCCAACACCATAGGTAAAGAAGCTAATGCAGCACAGACTTCTGTGCGACCTGATTTGGGGGGTCTCGAACAGTATATTGGATTTCGCGTTGGAGATGCCAGTAATGCCTCCCATGTGTTTAATCCAGTTCTGAATAGCCAAACAATGAGCCCGGATCCACGTAATCAGTCTGG...

Protein

4 records

下载 Protein FASTA

XP_057770419.1
MARATVNIGGDANRRASSGMPSFISQAPLSNTIGKEANAAQTSVRPDLGGLEQYIGFRVGDASNASHVFNPVLNSQTMSPDPRNQSGAFDMYVQSSASTNANFSRDFRSGAGQVQKGLQQNLVSATGAQDENWRESNMADSSSHTETSTDMDPDDKNYKFEIGQSTAVGASDSGDRSKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEVQQARQQGVIVSSNGDQSNAGTGNGALAFDMEYTRWVEEQNRR...

XP_057770420.1
MARATVNIGGDANRRASSGMPSFISQAPLSNTIGKEANAAQTSVRPDLGGLEQYIGFRVGDASNASHVFNPVLNSQTMSPDPRNQSGAFDMSSASTNANFSRDFRSGAGQVQKGLQQNLVSATGAQDENWRESNMADSSSHTETSTDMDPDDKNYKFEIGQSTAVGASDSGDRSKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEVQQARQQGVIVSSNGDQSNAGTGNGALAFDMEYTRWVEEQNRRINE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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