Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001547`

染色体: Chr06 坐标: 16773395-16778041 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001547`
名称	SmilChr06G001547
描述	putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	16773395 - 16778041 / `+`

ID 对照

NCBI Gene ID	`LOC130990224`
GeneID	`130990224`
locus_tag	`-`
NCBI Name	`LOC130990224`
原始查询	`SmilChr06G001547`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1
产物	putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1
Arabidopsis	`AT5G05130` (AT5G05130) DNA/RNA helicase protein [Source:NCBI gene (formerly Entrezgene);Acc:830395] identity=59.7; qcov=0.912; evalue=0; confidence=high
Rice	`Os07g0642400` - identity=50.7; qcov=0.895; evalue=0; confidence=high
GO	GO:0003676 (nucleic acid binding); GO:0005524 (ATP binding); GO:0008270 (zinc ion binding); GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides); GO:0140658 (ATP-dependent chromatin remodeler activity)
KEGG	-
Pfam	PF00097 (zf-C3HC4); PF00176 (SNF2-rel_dom); PF00271 (Helicase_C); PF04851 (ResIII); PF08797 (HIRAN)
InterPro	-
eggNOG	-
NR	GeneID:130990224

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057770435.1`
2	Chromosome	染色体	0.00000	`XP_057770435.1`
3	Centromere	着丝粒	0.00000	`XP_057770435.1`
4	Chromatin	染色质	0.00000	`XP_057770435.1`
5	Telomere	端粒	0.00000	`XP_057770435.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:16773527`	`T`	`TA`	1bp_insertion	frameshift_variant	78	A10,A11,A15,A21,A22,A24,A25,A5,A6,A7,B102,B105,B106,B108,B109,B115,B119,B120,B124,B135,B136,B17,B20,B22,B24,B28,B29,B34,B36,B37,B4,B49,B5,B55,B65,B68,B69,B72,B74,B76,B79,B81,B84,B86,B91,B93,B96,B99,C13,C16,C17,C19,C24,C26,C33,C34,C36,C42,C43,C45,C46,C48,C5,C51,C53,C57,C60,C73,C77,C78,C8,C81,C85,C86,D11,D2,D4,D8
`Chr6:16773576`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C42,D7
`Chr6:16773637`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,D10
`Chr6:16773700`	`TCA`	`T`	2bp_deletion	frameshift_variant	1	C67
`Chr6:16773700`	`TCA`	`T`	2bp_deletion	CDS_variant	1	C67
`Chr6:16773837`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr6:16773932`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A21,B28
`Chr6:16775436`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C18,C63
`Chr6:16775446`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A20,B12,B64,C6
`Chr6:16775690`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C42
`Chr6:16775713`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B113
`Chr6:16775762`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C43

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770435.1

923 aa

462

923

HIRAN

SNF2-rel_dom

ResIII

zf-C3HC4

Helicase_C

PF08797 HIRAN 97-189 aa PF00176 SNF2-rel_dom 271-639 aa PF04851 ResIII 407-514 aa PF00097 zf-C3HC4 680-718 aa PF00271 Helicase_C 750-866 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770435.1`	Pfam	`PF08797`	HIRAN	Domain	97	189	4.2e-20	72.1	HIRAN domain
`XP_057770435.1`	Pfam	`PF00176`	SNF2-rel_dom	Domain	271	639	4.2e-69	233.5	SNF2-related domain
`XP_057770435.1`	Pfam	`PF04851`	ResIII	Family	407	514	1.3e-06	29.2	Type III restriction enzyme, res subunit
`XP_057770435.1`	Pfam	`PF00097`	zf-C3HC4	Domain	680	718	7.1e-05	23.3	Zinc finger, C3HC4 type (RING finger)
`XP_057770435.1`	Pfam	`PF00271`	Helicase_C	Domain	750	866	2e-20	73.8	Helicase conserved C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057914452.1
GAACTTAGAAACGAGAGGACGTTAACATTAGATCTCTCAAACTTCAATGGTGAGTTCCGAAATCGGAAAACATGAGAGGGTCAAAATGCAAAGTATCCACACGCCGTAACGTGTACCCTTCCTCTCTCTCACTAACCCGCCTTTTCGCCCAATTCAAACCGCCCACGAGAAAGAAAACCCTCCTCCAATTTCTCAGCAAAACCCCTCTCAAAATCTCAACCCTACATATGGAAGAAATTGAAGTGGTAAAGGAGGATTGC...

CDS

1 records

下载 CDS FASTA

LOC130990224
ATGAGAGGGTCAAAATGCAAAGTATCCACACGCCGTAACGTGTACCCTTCCTCTCTCTCACTAACCCGCCTTTTCGCCCAATTCAAACCGCCCACGAGAAAGAAAACCCTCCTCCAATTTCTCAGCAAAACCCCTCTCAAAATCTCAACCCTACATATGGAAGAAATTGAAGTGGTAAAGGAGGATTGCCGGGACCCGGTGGATTTGTTCATGACCTTGGACAGCTGGCCTATCTCACCCCGCAACGACGACGGCGCCAC...

Protein

1 records

下载 Protein FASTA

XP_057770435.1
MRGSKCKVSTRRNVYPSSLSLTRLFAQFKPPTRKKTLLQFLSKTPLKISTLHMEEIEVVKEDCRDPVDLFMTLDSWPISPRNDDGATQSQPDTFLVGFVIVNVVGLRYYQGTISGREIVGLVRDDLNPHDENAIKVLNMLSVQVGFIERAAAAVLSPLIDSRSINVEGIVPKPPGKGNRFKIPCQIHIFARIEDFERVKLAISRGGLQLISEDNASFTLSEAMAVKETKSILEEKSVDEIFKLLDLKVSKEGLSEPLEPP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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