Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001548`

染色体: Chr06 坐标: 16790521-16792384 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001548`
名称	SmilChr06G001548
描述	uncharacterized SmilChr06G001548
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	16790521 - 16792384 / `-`

ID 对照

NCBI Gene ID	`LOC130990225`
GeneID	`130990225`
locus_tag	`-`
NCBI Name	`LOC130990225`
原始查询	`SmilChr06G001548`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hAT dimerization domain-containing protein / transposase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:816101]; symbol=AT2G16040; hit=AT2G16040; species=arabidopsis; confidence=high
产物	hAT dimerization domain-containing protein / transposase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:816101]; symbol=AT2G16040; hit=AT2G16040; species=arabidopsis; confidence=high
Arabidopsis	`AT2G16040` (AT2G16040) hAT dimerization domain-containing protein / transposase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:816101] identity=46.3; qcov=0.89; evalue=8.37e-65; confidence=high
Rice	`-` -
GO	GO:0046983 (protein dimerization activity)
KEGG	-
Pfam	PF05699 (Dimer_Tnp_hAT)
InterPro	-
eggNOG	-
NR	GeneID:130990225

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057770436.1`
2	Chromosome	染色体	0.40000	`XP_057770436.1`
3	Centromere	着丝粒	0.00000	`XP_057770436.1`
4	Chromatin	染色质	0.00000	`XP_057770436.1`
5	Telomere	端粒	0.00000	`XP_057770436.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:16790615`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C43
`Chr6:16790694`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B105
`Chr6:16790783`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B128
`Chr6:16790945`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B128,B3
`Chr6:16790957`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B128,B3,C35
`Chr6:16791004`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B91,D7
`Chr6:16791032`	`G`	`A`	EMS_canonical_SNV	stop_gained	18	A16,A23,A9,B131,B20,B33,B36,B38,B40,B74,C16,C33,C46,C56,C65,C68,C74,C76
`Chr6:16791041`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B135,B58,B78,C42
`Chr6:16791048`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B37,C19,C82
`Chr6:16791110`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B52
`Chr6:16791116`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A7,C47,C59
`Chr6:16791122`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B23,C64,C66

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770436.1

255 aa

128

255

Dimer_Tnp_hAT

PF05699 Dimer_Tnp_hAT 171-228 aa

XP_057770437.1

255 aa

128

255

Dimer_Tnp_hAT

PF05699 Dimer_Tnp_hAT 171-228 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770436.1`	Pfam	`PF05699`	Dimer_Tnp_hAT	Domain	171	228	9.9e-15	54.8	hAT family C-terminal dimerisation region
`XP_057770437.1`	Pfam	`PF05699`	Dimer_Tnp_hAT	Domain	171	228	9.9e-15	54.8	hAT family C-terminal dimerisation region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057914453.1
CTCTCTAAATTATAAAGAAGGATCAAACCAAACGTCTCTTTCTCAGTTCTCAATTTTCTCCAATTCTATTTTCTCTTCTACTATCTCTCTCAAGTCTAAAACTCATTATCTCCATTCTCCAATTCTCTATACTGCAGTGTTTAACAAATAACAATCAACATTCAACAGACAACAAGCAAGGTTGGGATGTTAGTCTATGACTCAGTGGAAATTCAAATTCATTTATAGAGCAAGAGATTAGAGAAGAAATCTGAAATCAT...

XM_057914454.1
CTCTCTAAATTATAAAGAAGGATCAAACCAAACGTCTCTTTCTCAGTTCTCAATTTTCTCCAATTCTATTTTCTCTTCTACTATCTCTCTCAAGTCTAAAACTCATTATCTCCATTCTCCAATTCTCTATACTGCAGTGTTTAACAAATAACAATCAACATTCAACAGACAACAAGCAAGGTAATTAGGTTGGGATGTTAGTCTATGACTCAGTGGAAATTCAAATTCATTTATAGAGCAAGAGATTAGAGAAGAAATCT...

CDS

2 records

下载 CDS FASTA

LOC130990225
ATGTTGATTGATACTGCCATGAGCGAGATAAAGGGTTTGGCTTCTTTTTTTAAAAGTTATAGAGAAACCGGATTTTCAAGTGCTATGGAAACTGCGAAACAATTAGCAAATGAATTAGGAACTGACCCTATATTTCCTCAAAGGCGTATAATACGTAGAAAAAGACAATTTGATGAGATGGTTGGTGAGGAAACATCACTATCTTTAGAGGAAGAATTTAGAATTCAATACTTTTTATACATTGTAGATCAAGCAATTGC...

Protein

2 records

下载 Protein FASTA

XP_057770436.1
MLIDTAMSEIKGLASFFKSYRETGFSSAMETAKQLANELGTDPIFPQRRIIRRKRQFDEMVGEETSLSLEEEFRIQYFLYIVDQAIASLDKRFEQYELYENIFGFLFDSEKLRSLDDIKLQSCCSHFEDALRKGEVSDIHGHDLYIELKLFREMLPKEKMGARDLSIFLKRFNCFPNVMIAYRILLTVPVTVASAERSFSKLKLLKSHLRTTMSQERLNGLALMAIECDLLEEIDDESVISDFVSKFTRRAALFK

XP_057770437.1
MLIDTAMSEIKGLASFFKSYRETGFSSAMETAKQLANELGTDPIFPQRRIIRRKRQFDEMVGEETSLSLEEEFRIQYFLYIVDQAIASLDKRFEQYELYENIFGFLFDSEKLRSLDDIKLQSCCSHFEDALRKGEVSDIHGHDLYIELKLFREMLPKEKMGARDLSIFLKRFNCFPNVMIAYRILLTVPVTVASAERSFSKLKLLKSHLRTTMSQERLNGLALMAIECDLLEEIDDESVISDFVSKFTRRAALFK

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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