Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.

Resolved gene

`SmilChr06G001552`

Chromosome: Chr06 Coordinates: 16899247-16901780 Strand: + Biotype: protein_coding

Basic Information

Standard Gene ID	`SmilChr06G001552`
Name	SmilChr06G001552
Description	G2/mitotic-specific cyclin S13-7-like
Chromosome / SeqID	Chr06 / NC_080392.1
Coordinates and Strand	16899247 - 16901780 / `+`

ID Mapping

NCBI Gene ID	`LOC130990228`
GeneID	`130990228`
locus_tag	`-`
NCBI Name	`LOC130990228`
Original query	`SmilChr06G001552`

Open ID mapping

Functional Annotation

Source	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
Description	G2/mitotic-specific cyclin S13-7-like
Product	G2/mitotic-specific cyclin S13-7-like
Arabidopsis	`AT5G06150` (CYC1BAT) Cyclin family protein [Source:NCBI gene (formerly Entrezgene);Acc:830502] identity=55.2; qcov=0.97; evalue=9.83e-155; confidence=high
Rice	`Os01g0805600` (CycB1) - identity=47.1; qcov=0.991; evalue=7.28e-118; confidence=high
GO	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity); GO:0000307 (cyclin-dependent protein kinase holoenzyme complex); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0005813 (centrosome); GO:0016538 (cyclin-dependent protein serine/threonine kinase regulator activity); GO:0044772 (mitotic cell cycle phase transition)
KEGG	-
Pfam	PF00134 (Cyclin_N); PF02984 (Cyclin_C)
InterPro	-
eggNOG	-
NR	GeneID:130990228

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Subcellular Localization Top 5

Rank	Location	Chinese	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057770441.1`
2	Chromosome	染色体	0.20000	`XP_057770441.1`
3	Centromere	着丝粒	0.00000	`XP_057770441.1`
4	Chromatin	染色质	0.00000	`XP_057770441.1`
5	Telomere	端粒	0.00000	`XP_057770441.1`

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EMS Mutant Variants

The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.

Position	REF	ALT	Type	Effect	Carriers	Samples
`Chr6:16899769`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C42
`Chr6:16899796`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C14
`Chr6:16899801`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C43
`Chr6:16900254`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C42
`Chr6:16900448`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B77
`Chr6:16900467`	`C`	`T`	EMS_canonical_SNV	stop_gained	11	A10,B14,B36,B68,B95,C17,C2,C30,C50,C84,D2
`Chr6:16901148`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr6:16901153`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C42
`Chr6:16901166`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr6:16901295`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B14,B53,B95,C34,C75
`Chr6:16901302`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C14
`Chr6:16901352`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C4

Open EMS variants

Predicted Protein Domains

Domain results are from the Pfam-A HMM database and HMMER hmmscan; positions are amino-acid coordinates on the corresponding protein sequence.

XP_057770441.1

437 aa

218

437

Cyclin_N

Cyclin_C

PF00134 Cyclin_N 187-312 aa PF02984 Cyclin_C 314-431 aa

Protein ID	Source	Domain ID	Domain name	Type	Start aa	End aa	E-value	Score	Description
`XP_057770441.1`	Pfam	`PF00134`	Cyclin_N	Domain	187	312	4.5e-47	159.6	Cyclin, N-terminal domain
`XP_057770441.1`	Pfam	`PF02984`	Cyclin_C	Domain	314	431	2.1e-35	122.0	Cyclin, C-terminal domain

cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

1 records

Download cDNA FASTA

XM_057914458.1
CCCCATTTGCTCTGTTCCTCTCTTCTCTATTTTCCCTTGCTTTCCTATAGAGAGAGAGAGTGAAAGAAGAAGGCAAGTTGCAGAAGACGACGGTTTTAGATTTTTTTTTACCAAGATTTTGATCATGGCTTCAAAGCAAGTGGTTGAACAACGTAACGCTGAAGAGGCGGTGGCCGCAGCGGCGAATAAACAGAACAGAGTGGCAGCGGAGAGGAAGAGCCGCCGGGTACTAGGCGACATTGGGAATCTCATCCCTGCTA...

CDS

1 records

Download CDS FASTA

LOC130990228
ATGGCTTCAAAGCAAGTGGTTGAACAACGTAACGCTGAAGAGGCGGTGGCCGCAGCGGCGAATAAACAGAACAGAGTGGCAGCGGAGAGGAAGAGCCGCCGGGTACTAGGCGACATTGGGAATCTCATCCCTGCTAATGGGGTTGTTGAAGGCAAGCAGATTCCTCGGATTTCTCGACCTATTACGAGGAGTCTTGGTGCTCGATTACTCGCTAATGCACAGGCTGCACAAGCTCAAACCAACATGAATTCATTGGAGGC...

Protein

1 records

Download Protein FASTA

XP_057770441.1
MASKQVVEQRNAEEAVAAAANKQNRVAAERKSRRVLGDIGNLIPANGVVEGKQIPRISRPITRSLGARLLANAQAAQAQTNMNSLEANANEAYANAAVPQKRVVARRPAQKRVVSTKLKPEEIIEISPDSNEVTVKEKKLLSKETESKKKLPTLTSALTARSKAATIVDIDAQDLGNDLAVVEYVEEIYNFYKSVENEGRAHDYMDSQPELNERMRAILIDWLIQVHYKFELSLETLYLTINIIDRFLASKTISRRELQL...

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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