当前解析结果
SmilChr06G001565| 统一新 Gene ID | SmilChr06G001565 |
|---|---|
| 名称 | SmilChr06G001565 |
| 描述 | uncharacterized SmilChr06G001565 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 17093071 - 17093619 / - |
| NCBI Gene ID | LOC130990583 |
|---|---|
| GeneID | 130990583 |
| locus_tag | - |
| NCBI Name | LOC130990583 |
| 原始查询 | SmilChr06G001565 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | P0604E01.25; symbol=P0604E01.25; hit=Os08g0561000; species=rice; confidence=low |
| 产物 | P0604E01.25; symbol=P0604E01.25; hit=Os08g0561000; species=rice; confidence=low |
| Arabidopsis | -- |
| Rice | Os08g0561000 (P0604E01.25)- identity=41.1; qcov=0.401; evalue=2.27e-07; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990583 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057770788.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057770788.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057770788.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057770788.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057770788.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:17093078 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B68,B69,B91,C86 |
Chr6:17093081 |
T |
TC |
1bp_insertion | frameshift_variant | 62 | A1,A11,A18,A2,A23,A25,B1,B10,B102,B103,B104,B106,B108,B118,B126,B129,B134,B14,B17,B20,B33,B40,B41,B44,B46,B52,B53,B57,B64,B65,B66,B72,B73,B78,B90,B91,B92,B94,B99,C1,C15,C16,C20,C21,C22,C23,C24,C25,C30,C33,C34,C36,C41,C44,C49,C52,C58,C61,C72,C75,C84,C87 |
Chr6:17093089 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B16,B78,C14 |
Chr6:17093091 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr6:17093100 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C30,D3 |
Chr6:17093116 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A21,B113,B118,B82,C87 |
Chr6:17093139 |
G |
A |
EMS_canonical_SNV | stop_gained | 13 | A19,B105,B110,B114,B121,B134,B42,B43,B60,B90,B92,C50,D6 |
Chr6:17093154 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,C71 |
Chr6:17093177 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B134,C35 |
Chr6:17093192 |
TC |
T |
1bp_deletion | frameshift_variant | 58 | A10,A11,A21,A22,A25,A5,A6,B108,B109,B114,B115,B120,B124,B138,B20,B22,B24,B28,B36,B45,B49,B5,B55,B63,B76,B79,B81,B83,B86,B93,B97,B98,B99,C14,C17,C26,C33,C34,C36,C43,C45,C47,C48,C51,C53,C57,C60,C7,C70,C77,C78,C79,C8,C81,C86,D2,D4,D5 |
Chr6:17093195 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B134,B48,B57,C20,C35 |
Chr6:17093218 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B16,B78,C14 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。