当前解析结果
SmilChr06G001574| 统一新 Gene ID | SmilChr06G001574 |
|---|---|
| 名称 | SmilChr06G001574 |
| 描述 | nascent polypeptide-associated complex subunit alpha-like protein |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 17196374 - 17199286 / + |
| NCBI Gene ID | LOC130990247 |
|---|---|
| GeneID | 130990247 |
| locus_tag | - |
| NCBI Name | LOC130990247 |
| 原始查询 | SmilChr06G001574 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | nascent polypeptide-associated complex subunit alpha-like protein |
| 产物 | nascent polypeptide-associated complex subunit alpha-like protein |
| Arabidopsis | AT5G13850 (NACA3)nascent polypeptide-associated complex subunit alpha-like protein 3 [Source:NCBI gene (formerly Entrezgene);Acc:831231] identity=74; qcov=1.04; evalue=4.52e-78; confidence=high |
| Rice | Os01g0938900- identity=79.3; qcov=1.01; evalue=4.3e-98; confidence=high |
| GO | GO:0005737 (cytoplasm); GO:0005854 (nascent polypeptide-associated complex); GO:0006612 (protein targeting to membrane); GO:0051082 (GO:0051082) |
| KEGG | - |
| Pfam | PF01849 (NAC); PF19026 (UBA_HYPK) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990247 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057770460.1 |
| 2 | Nucleus | 细胞核 | 0.80000 | XP_057770460.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057770460.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057770460.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057770460.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:17196569 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B97 |
Chr6:17197877 |
A |
ATG |
2bp_insertion | frameshift_variant | 1 | B35 |
Chr6:17197877 |
A |
ATG |
2bp_insertion | CDS_variant | 1 | B35 |
Chr6:17198547 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C61 |
Chr6:17198606 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C61,C9 |
Chr6:17198800 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A20,B45,B89,C10,C72 |
Chr6:17198816 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B84 |
Chr6:17198992 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057770460.1PF01849
NAC 58-113 aa
PF19026
UBA_HYPK 156-195 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770460.1 |
Pfam | PF01849 |
NAC | Family | 58 | 113 | 1.5e-24 | 86.4 | NAC domain |
XP_057770460.1 |
Pfam | PF19026 |
UBA_HYPK | Domain | 156 | 195 | 3.1e-14 | 52.8 | HYPK UBA domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。