Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001590`

染色体: Chr06 坐标: 17562667-17568253 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001590`
名称	SmilChr06G001590
描述	phosphoethanolamine N-methyltransferase 1-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	17562667 - 17568253 / `+`

ID 对照

NCBI Gene ID	`LOC130990261`
GeneID	`130990261`
locus_tag	`-`
NCBI Name	`LOC130990261`
原始查询	`SmilChr06G001590`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	phosphoethanolamine N-methyltransferase 1-like
产物	phosphoethanolamine N-methyltransferase 1-like
Arabidopsis	`AT3G18000` (XPL1) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821324] identity=80.8; qcov=0.998; evalue=0; confidence=high
Rice	`Os01g0695100` (OsPEAMT1) - identity=77.7; qcov=0.996; evalue=0; confidence=high
GO	GO:0000234 (phosphoethanolamine N-methyltransferase activity); GO:0006656 (phosphatidylcholine biosynthetic process)
KEGG	smil00564 (Glycerophospholipid metabolism - Salvia miltiorrhiza (redroot sage))
Pfam	PF01209 (Ubie_methyltran); PF02353 (CMAS); PF03848 (TehB); PF05175 (MTS); PF05891 (Methyltransf_PK); PF07021 (MetW); PF08241 (Methyltransf_11); PF08242 (Methyltransf_12); PF13489 (Methyltransf_23); PF13649 (Methyltransf_25); PF13847 (Methyltransf_31)
InterPro	-
eggNOG	-
NR	GeneID:130990261

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057770477.1`
2	Cytosol	细胞质基质	1.00000	`XP_057770477.1`
3	Nucleus	细胞核	0.20000	`XP_057770477.1`
4	Chromosome	染色体	0.00000	`XP_057770477.1`
5	Centromere	着丝粒	0.00000	`XP_057770477.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:17565199`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A2,B20,B49,B99,C42
`Chr6:17566585`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B33,D10
`Chr6:17566679`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B27,B38,B44,B51,C55
`Chr6:17566681`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A2
`Chr6:17566929`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B84
`Chr6:17566994`	`CG`	`C`	1bp_deletion	frameshift_variant	1	B73
`Chr6:17566994`	`CG`	`C`	1bp_deletion	CDS_variant	1	B73

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770477.1

491 aa

246

491

Ubie_methyltran

Methyltransf_23

Methyltransf_31

TehB

Methyltransf_PK

Methyltransf_25

Methyltransf_12

Methyltransf_11

MTS

CMAS

Ubie_methyltran

Methyltransf_23

MetW

Methyltransf_31

Methyltransf_25

Methyltransf_12

Methyltransf_11

PF01209 Ubie_methyltran 48-156 aa PF13489 Methyltransf_23 48-161 aa PF13847 Methyltransf_31 53-183 aa PF03848 TehB 55-154 aa PF05891 Methyltransf_PK 55-190 aa PF13649 Methyltransf_25 57-152 aa PF08242 Methyltransf_12 58-154 aa PF08241 Methyltransf_11 58-156 aa PF05175 MTS 263-354 aa PF02353 CMAS 263-462 aa PF01209 Ubie_methyltran 272-388 aa PF13489 Methyltransf_23 275-425 aa PF07021 MetW 280-362 aa PF13847 Methyltransf_31 282-393 aa PF13649 Methyltransf_25 286-379 aa PF08242 Methyltransf_12 287-380 aa PF08241 Methyltransf_11 287-383 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770477.1`	Pfam	`PF01209`	Ubie_methyltran	Family	48	156	4.9e-20	72.6	ubiE/COQ5 methyltransferase family
`XP_057770477.1`	Pfam	`PF13489`	Methyltransf_23	Domain	48	161	5.3e-31	108.3	Methyltransferase domain
`XP_057770477.1`	Pfam	`PF13847`	Methyltransf_31	Domain	53	183	5.6e-37	127.5	Methyltransferase domain
`XP_057770477.1`	Pfam	`PF03848`	TehB	Family	55	154	9.6e-11	42.2	Tellurite resistance protein TehB
`XP_057770477.1`	Pfam	`PF05891`	Methyltransf_PK	Family	55	190	5.5e-13	49.7	AdoMet dependent proline di-methyltransferase
`XP_057770477.1`	Pfam	`PF13649`	Methyltransf_25	Domain	57	152	1.1e-39	135.7	Methyltransferase domain
`XP_057770477.1`	Pfam	`PF08242`	Methyltransf_12	Domain	58	154	3.4e-28	99.0	Methyltransferase domain
`XP_057770477.1`	Pfam	`PF08241`	Methyltransf_11	Domain	58	156	8.6e-39	132.8	Methyltransferase domain
`XP_057770477.1`	Pfam	`PF05175`	MTS	Domain	263	354	4.2e-11	43.4	Methyltransferase small domain
`XP_057770477.1`	Pfam	`PF02353`	CMAS	Family	263	462	2e-17	64.1	Mycolic acid cyclopropane synthetase
`XP_057770477.1`	Pfam	`PF01209`	Ubie_methyltran	Family	272	388	4.9e-20	72.6	ubiE/COQ5 methyltransferase family
`XP_057770477.1`	Pfam	`PF13489`	Methyltransf_23	Domain	275	425	5.3e-31	108.3	Methyltransferase domain
`XP_057770477.1`	Pfam	`PF07021`	MetW	Family	280	362	4e-06	27.3	Methionine biosynthesis protein MetW
`XP_057770477.1`	Pfam	`PF13847`	Methyltransf_31	Domain	282	393	5.6e-37	127.5	Methyltransferase domain
`XP_057770477.1`	Pfam	`PF13649`	Methyltransf_25	Domain	286	379	1.1e-39	135.7	Methyltransferase domain
`XP_057770477.1`	Pfam	`PF08242`	Methyltransf_12	Domain	287	380	3.4e-28	99.0	Methyltransferase domain
`XP_057770477.1`	Pfam	`PF08241`	Methyltransf_11	Domain	287	383	8.6e-39	132.8	Methyltransferase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057914494.1
GGAACGGCAGAGAATCTTGGGTACGTTCACGTGGGAGTGGTCCATTTGGCCGTGCAATCATACTCGTGATTCAGTACCCCACCCCCCACCCTCCCCTCCCCCTTCCACCTACTCTCCGCCTCGCCTCCCCGCATCCCTCACCTTATTACCAGCGCCTTCTTCTTCGTACATGGCAAAATTGGCAAGCCCACCACCACCCAATTCACTTTTTTAACACCATTTCCTCAATATCTCCGATTTTCCGCTATAAATACCCAACC...

CDS

1 records

下载 CDS FASTA

LOC130990261
ATGGCTGCCCTTCATGAGCAAGAGCGTGAGATTCAGAAGAGTTACTGGATGGAGCATTCTGCGGGCCTGACGTTGGAAGCCATGATGCTTGATTCCAAGGCGGCTGATCTTGACAAAGAAGAGAGGCCTGAGGTGATATCCCTGCTCCCACCCTTTGATGGAAAGTCAGTTCTGGAACTTGGAGCTGGCATTGGCCGCTTCACCGGTGAATTGGCTAAAAAGGCTGGTCAAGTCATAGCTCTCGACTTTATTGAAAGTGT...

Protein

1 records

下载 Protein FASTA

XP_057770477.1
MAALHEQEREIQKSYWMEHSAGLTLEAMMLDSKAADLDKEERPEVISLLPPFDGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNETLNRHHQNVKFICADVTSPDLNFSEGSLDVIFSNWLLMYLSDKEVQDLVKRMVKWLKVGGYIFFRESCFHQSGDHKRKSNPTHYREPSFYTKIFKECHAADNSGNSFELALIGCKCIGAYVKNKKNQNQICWLWQKVTSDDDRKFQRFLDTVQYKCSGILRYERVFGQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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