Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001628`

染色体: Chr06 坐标: 18205034-18211168 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001628`
名称	SmilChr06G001628
描述	uncharacterized SmilChr06G001628
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	18205034 - 18211168 / `-`

ID 对照

NCBI Gene ID	`LOC130990293`
GeneID	`130990293`
locus_tag	`-`
NCBI Name	`LOC130990293`
原始查询	`SmilChr06G001628`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295) [Source:NCBI gene (formerly Entrezgene);Acc:838397]; symbol=AT1G18180; hit=AT1G18180; species=arabidopsis; confidence=high
产物	3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295) [Source:NCBI gene (formerly Entrezgene);Acc:838397]; symbol=AT1G18180; hit=AT1G18180; species=arabidopsis; confidence=high
Arabidopsis	`AT1G18180` (AT1G18180) 3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295) [Source:NCBI gene (formerly Entrezgene);Acc:838397] identity=73.9; qcov=1.01; evalue=4.75e-124; confidence=high
Rice	`Os03g0708400` - identity=77; qcov=0.935; evalue=2.84e-119; confidence=high
GO	GO:0006629 (lipid metabolic process); GO:0016020 (membrane); GO:0016627 (oxidoreductase activity, acting on the CH-CH group of donors)
KEGG	-
Pfam	PF02544 (Steroid_dh); PF06966 (DUF1295)
InterPro	-
eggNOG	-
NR	GeneID:130990293

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057770489.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057770489.1`
3	Nucleus	细胞核	0.00000	`XP_057770489.1`
4	Chromosome	染色体	0.00000	`XP_057770489.1`
5	Centromere	着丝粒	0.00000	`XP_057770489.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:18206520`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B17
`Chr6:18206651`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B93
`Chr6:18207906`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr6:18210859`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B23,C64,C66

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770489.1

303 aa

152

303

DUF1295

Steroid_dh

PF06966 DUF1295 24-252 aa PF02544 Steroid_dh 106-201 aa

XP_057770490.1

294 aa

147

294

DUF1295

Steroid_dh

PF06966 DUF1295 24-252 aa PF02544 Steroid_dh 106-201 aa

XP_057770491.1

289 aa

144

289

DUF1295

Steroid_dh

PF06966 DUF1295 24-252 aa PF02544 Steroid_dh 106-201 aa

XP_057770492.1

232 aa

116

232

DUF1295

Steroid_dh

PF06966 DUF1295 1-181 aa PF02544 Steroid_dh 35-130 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770489.1`	Pfam	`PF06966`	DUF1295	Family	24	252	4.2e-92	308.6	Protein of unknown function (DUF1295)
`XP_057770489.1`	Pfam	`PF02544`	Steroid_dh	Family	106	201	1.3e-05	25.9	3-oxo-5-alpha-steroid 4-dehydrogenase
`XP_057770490.1`	Pfam	`PF06966`	DUF1295	Family	24	252	3.9e-92	308.7	Protein of unknown function (DUF1295)
`XP_057770490.1`	Pfam	`PF02544`	Steroid_dh	Family	106	201	1.2e-05	26.0	3-oxo-5-alpha-steroid 4-dehydrogenase
`XP_057770491.1`	Pfam	`PF06966`	DUF1295	Family	24	252	3.7e-92	308.8	Protein of unknown function (DUF1295)
`XP_057770491.1`	Pfam	`PF02544`	Steroid_dh	Family	106	201	1.2e-05	26.1	3-oxo-5-alpha-steroid 4-dehydrogenase
`XP_057770492.1`	Pfam	`PF06966`	DUF1295	Family	1	181	7.1e-78	262.0	Protein of unknown function (DUF1295)
`XP_057770492.1`	Pfam	`PF02544`	Steroid_dh	Family	35	130	3e-06	28.0	3-oxo-5-alpha-steroid 4-dehydrogenase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057914508.1
AGAAAAGTCAAGACATAAGCCATGGCTGGCAACTTTGAGAGAGAGAGAATAAGGTGCTTATTAGTACAGCACTCCCTCCCGACTCTGGTTTGTTCTAAACCACACACTACCCAATATGTGTAATAATAAATGAAATTCGTTGCTTTGCGAGTCAAAACAATATTCTACTATTATATTATTAACAGCCGAAGTAGTTTCGTTTACATATTTTGTCACAGTGAAAAGCGCTGTTAGTTGTTAGTTGGAATTCCAGCTTAAAT...

XM_057914506.1
AGAGAGAGAATAAGGTGCTTATTAGTACAGCACTCCCTCCCGACTCTGGTTTGTTCTAAACCACACACTACCCAATATGTGTAATAATAAATGAAATTCGTTGCTTTGCGAGTCAAAACAATATTCTACTATTATATTATTAACAGCCGAAGTAGTTTCGTTTACATATTTTGTCACAGTGAAAAGCGCTGTTAGTTGTTAGTTGGAATTCCAGCTTAAATAGATCATCTGTTGATTCATGGGAACCGTTATCGATTCCC...

CDS

4 records

下载 CDS FASTA

LOC130990293
ATGGGAACCGTTATCGATTCCCATTTCTTGGCCCTCACCGCCATCGTCACTGTGGCATATCAATTCTTCTTCTTTGTGATCACAGCTCTTCTGAAATTTGATAAAGTCACTGATTTTGCAGGTAGCACAAATTTCGTAATACTCGCTATCCTTACCTTGATTGTCAACGGATCATGGCACTTCCGGCAGGTGATATTGTCCCTTCTTGTAGTTATGTGGGGCCTTCGTCTGGGGATTTTTCTATTAATGAGGATACTGCA...

LOC130990293
ATGTGGGGCCTTCGTCTGGGGATTTTTCTATTAATGAGGATACTGCAGTGGGGGGAGGATCGGCGCTTTGATGAAATGCGTGAGAATTTGGCAAAATTGGCTGTGTTTTGGATATTTCAGGCTGTATGGGTGTGGACTGTGAGTTTACCGGTGACATTTGTTAATGCAAGCAATCGAAATCCTTCCCTTCAAGCTGCGGATATTATTGGATGGATCATCTGGTCTGTAGGAATTCTTGTTGAAGCGACTGCCGACCAACA...

Protein

4 records

下载 Protein FASTA

XP_057770489.1
MGTVIDSHFLALTAIVTVAYQFFFFVITALLKFDKVTDFAGSTNFVILAILTLIVNGSWHFRQVILSLLVVMWGLRLGIFLLMRILQWGEDRRFDEMRENLAKLAVFWIFQAVWVWTVSLPVTFVNASNRNPSLQAADIIGWIIWSVGILVEATADQQKLTFKNSPDNRGKWCDVGVWKYSRHPNYFGEIFLWWGIFVAATPVLKNAEWLVILGPIFLTLLLLFVSGIPLLEESADKKYGNIPAYRHYKRKTSPLILLPP...

XP_057770490.1
MGTVIDSHFLALTAIVTVAYQFFFFVITALLKFDKVTDFAGSTNFVILAILTLIVNGSWHFRQVILSLLVVMWGLRLGIFLLMRILQWGEDRRFDEMRENLAKLAVFWIFQAVWVWTVSLPVTFVNASNRNPSLQAADIIGWIIWSVGILVEATADQQKLTFKNSPDNRGKWCDVGVWKYSRHPNYFGEIFLWWGIFVAATPVLKNAEWLVILGPIFLTLLLLFVSGIPLLEESADKKYGNIPAYRHYKRKTSPLILLPP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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