当前解析结果
SmilChr06G001641| 统一新 Gene ID | SmilChr06G001641 |
|---|---|
| 名称 | SmilChr06G001641 |
| 描述 | actin-interacting protein 1-2 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 18538860 - 18548020 / + |
| NCBI Gene ID | LOC130990301 |
|---|---|
| GeneID | 130990301 |
| locus_tag | - |
| NCBI Name | LOC130990301 |
| 原始查询 | SmilChr06G001641 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | actin-interacting protein 1-2 |
| 产物 | actin-interacting protein 1-2 |
| Arabidopsis | AT3G18060 (AT3G18060)transducin family protein / WD-40 repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:821331] identity=72.2; qcov=0.997; evalue=0; confidence=high |
| Rice | Os01g0125800 (P0044F08.16)- identity=65.7; qcov=1; evalue=0; confidence=high |
| GO | GO:0030042 (actin filament depolymerization); GO:0030836 (positive regulation of actin filament depolymerization); GO:0030864 (cortical actin cytoskeleton); GO:0051015 (actin filament binding) |
| KEGG | - |
| Pfam | PF00400 (WD40) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990301 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057770501.1 |
| 2 | Cytoskeleton | 细胞骨架 | 0.40000 | XP_057770501.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057770501.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057770501.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057770501.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:18539118 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr6:18539322 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B28 |
Chr6:18539387 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B125,C26,C87 |
Chr6:18541169 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B47,C34,C46,C75 |
Chr6:18542329 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B62 |
Chr6:18544036 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D5 |
Chr6:18544069 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B84 |
Chr6:18544069 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B84 |
Chr6:18544150 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B113,B84 |
Chr6:18544423 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr6:18545004 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B26,C40 |
Chr6:18547466 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B113 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057770501.1PF00400
WD40 62-84 aa
PF00400
WD40 136-173 aa
PF00400
WD40 183-215 aa
PF00400
WD40 230-260 aa
PF00400
WD40 484-519 aa
PF00400
WD40 533-562 aa
PF00400
WD40 575-604 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770501.1 |
Pfam | PF00400 |
WD40 | Repeat | 62 | 84 | 1.1e-59 | 197.0 | WD domain, G-beta repeat |
XP_057770501.1 |
Pfam | PF00400 |
WD40 | Repeat | 136 | 173 | 1.1e-59 | 197.0 | WD domain, G-beta repeat |
XP_057770501.1 |
Pfam | PF00400 |
WD40 | Repeat | 183 | 215 | 1.1e-59 | 197.0 | WD domain, G-beta repeat |
XP_057770501.1 |
Pfam | PF00400 |
WD40 | Repeat | 230 | 260 | 1.1e-59 | 197.0 | WD domain, G-beta repeat |
XP_057770501.1 |
Pfam | PF00400 |
WD40 | Repeat | 484 | 519 | 1.1e-59 | 197.0 | WD domain, G-beta repeat |
XP_057770501.1 |
Pfam | PF00400 |
WD40 | Repeat | 533 | 562 | 1.1e-59 | 197.0 | WD domain, G-beta repeat |
XP_057770501.1 |
Pfam | PF00400 |
WD40 | Repeat | 575 | 604 | 1.1e-59 | 197.0 | WD domain, G-beta repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。