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调控/突变
TF 结合位点 TF 靶基因 EMS 突变
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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr06G001643

染色体: Chr06 坐标: 18572559-18580309 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr06G001643
名称SmilChr06G001643
描述uncharacterized SmilChr06G001643
染色体 / SeqIDChr06 / NC_080392.1
坐标与链方向18572559 - 18580309 / +

ID 对照

NCBI Gene IDLOC130990303
GeneID130990303
locus_tag-
NCBI NameLOC130990303
原始查询SmilChr06G001643

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述myb domain protein 4r1 [Source:NCBI gene (formerly Entrezgene);Acc:821335]; symbol=MYB4R1; hit=AT3G18100; species=arabidopsis; confidence=high
产物myb domain protein 4r1 [Source:NCBI gene (formerly Entrezgene);Acc:821335]; symbol=MYB4R1; hit=AT3G18100; species=arabidopsis; confidence=high
ArabidopsisAT3G18100 (MYB4R1)
myb domain protein 4r1 [Source:NCBI gene (formerly Entrezgene);Acc:821335]
identity=45.7; qcov=0.698; evalue=0; confidence=high
RiceOs12g0238000 (OsMYB3R-1)
-
identity=35.9; qcov=0.175; evalue=6.25e-29; confidence=weak
GO-
KEGG-
PfamPF00249 (Myb_DNA-binding); PF13921 (Myb_DNA-bind_6)
InterPro-
eggNOG-
NRGeneID:130990303

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057770503.1
2 Chromosome 染色体 0.00000 XP_057770503.1
3 Centromere 着丝粒 0.00000 XP_057770503.1
4 Chromatin 染色质 0.00000 XP_057770503.1
5 Telomere 端粒 0.00000 XP_057770503.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr6:18572814 C T EMS_canonical_SNV CDS_variant 4 B14,B90,B92,C14
Chr6:18572863 C T EMS_canonical_SNV CDS_variant 2 C34,C75
Chr6:18572998 G A EMS_canonical_SNV CDS_variant 1 B62
Chr6:18573342 TTC T 2bp_deletion frameshift_variant 1 B59
Chr6:18573342 TTC T 2bp_deletion CDS_variant 1 B59
Chr6:18573627 G A EMS_canonical_SNV CDS_variant 2 B56,C85
Chr6:18574170 G A EMS_canonical_SNV CDS_variant 4 C2,C24,C32,C68
Chr6:18574222 G A EMS_canonical_SNV CDS_variant 1 C14
Chr6:18575060 C T EMS_canonical_SNV CDS_variant 2 B99,C30
Chr6:18578635 G A EMS_canonical_SNV CDS_variant 1 B114
Chr6:18578908 C T EMS_canonical_SNV CDS_variant 1 B93
Chr6:18579315 C T EMS_canonical_SNV CDS_variant 1 C14

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770503.1
1013 aa
N
1
506
1013
Myb_DNA-bind_6
Myb_DNA-binding
Myb_DNA-bind_6
Myb_DNA-binding
Myb_DNA-bind_6
Myb_DNA-binding
Myb_DNA-bind_6
Myb_DNA-binding
Myb_DNA-bind_6
C
PF13921 Myb_DNA-bind_6 388-438 aa PF00249 Myb_DNA-binding 428-472 aa PF13921 Myb_DNA-bind_6 430-488 aa PF00249 Myb_DNA-binding 480-526 aa PF13921 Myb_DNA-bind_6 483-533 aa PF00249 Myb_DNA-binding 534-579 aa PF13921 Myb_DNA-bind_6 536-596 aa PF00249 Myb_DNA-binding 587-627 aa PF13921 Myb_DNA-bind_6 588-631 aa
XP_057770505.1
988 aa
N
1
494
988
Myb_DNA-bind_6
Myb_DNA-binding
Myb_DNA-bind_6
Myb_DNA-binding
Myb_DNA-bind_6
Myb_DNA-binding
Myb_DNA-bind_6
Myb_DNA-binding
Myb_DNA-bind_6
C
PF13921 Myb_DNA-bind_6 388-438 aa PF00249 Myb_DNA-binding 428-472 aa PF13921 Myb_DNA-bind_6 430-488 aa PF00249 Myb_DNA-binding 480-526 aa PF13921 Myb_DNA-bind_6 483-533 aa PF00249 Myb_DNA-binding 534-579 aa PF13921 Myb_DNA-bind_6 536-596 aa PF00249 Myb_DNA-binding 587-627 aa PF13921 Myb_DNA-bind_6 588-631 aa
XP_057770506.1
986 aa
N
1
493
986
Myb_DNA-bind_6
Myb_DNA-binding
Myb_DNA-bind_6
Myb_DNA-binding
Myb_DNA-bind_6
Myb_DNA-binding
Myb_DNA-bind_6
Myb_DNA-binding
Myb_DNA-bind_6
C
PF13921 Myb_DNA-bind_6 388-438 aa PF00249 Myb_DNA-binding 428-472 aa PF13921 Myb_DNA-bind_6 430-488 aa PF00249 Myb_DNA-binding 480-526 aa PF13921 Myb_DNA-bind_6 483-533 aa PF00249 Myb_DNA-binding 534-579 aa PF13921 Myb_DNA-bind_6 536-596 aa PF00249 Myb_DNA-binding 587-627 aa PF13921 Myb_DNA-bind_6 588-631 aa
XP_057770507.1
973 aa
N
1
486
973
Myb_DNA-bind_6
Myb_DNA-binding
Myb_DNA-bind_6
Myb_DNA-binding
Myb_DNA-bind_6
Myb_DNA-binding
Myb_DNA-bind_6
Myb_DNA-binding
Myb_DNA-bind_6
C
PF13921 Myb_DNA-bind_6 388-438 aa PF00249 Myb_DNA-binding 428-472 aa PF13921 Myb_DNA-bind_6 430-488 aa PF00249 Myb_DNA-binding 480-526 aa PF13921 Myb_DNA-bind_6 483-533 aa PF00249 Myb_DNA-binding 534-579 aa PF13921 Myb_DNA-bind_6 536-596 aa PF00249 Myb_DNA-binding 587-627 aa PF13921 Myb_DNA-bind_6 588-631 aa
XP_057770508.1
971 aa
N
1
486
971
Myb_DNA-bind_6
Myb_DNA-binding
Myb_DNA-bind_6
Myb_DNA-binding
Myb_DNA-bind_6
Myb_DNA-binding
Myb_DNA-bind_6
Myb_DNA-binding
Myb_DNA-bind_6
C
PF13921 Myb_DNA-bind_6 388-438 aa PF00249 Myb_DNA-binding 428-472 aa PF13921 Myb_DNA-bind_6 430-488 aa PF00249 Myb_DNA-binding 480-526 aa PF13921 Myb_DNA-bind_6 483-533 aa PF00249 Myb_DNA-binding 534-579 aa PF13921 Myb_DNA-bind_6 536-596 aa PF00249 Myb_DNA-binding 587-627 aa PF13921 Myb_DNA-bind_6 588-631 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057770503.1 Pfam PF13921 Myb_DNA-bind_6 Domain 388 438 3.9e-46 155.8 Myb-like DNA-binding domain
XP_057770503.1 Pfam PF00249 Myb_DNA-binding Domain 428 472 2e-56 188.6 Myb-like DNA-binding domain
XP_057770503.1 Pfam PF13921 Myb_DNA-bind_6 Domain 430 488 3.9e-46 155.8 Myb-like DNA-binding domain
XP_057770503.1 Pfam PF00249 Myb_DNA-binding Domain 480 526 2e-56 188.6 Myb-like DNA-binding domain
XP_057770503.1 Pfam PF13921 Myb_DNA-bind_6 Domain 483 533 3.9e-46 155.8 Myb-like DNA-binding domain
XP_057770503.1 Pfam PF00249 Myb_DNA-binding Domain 534 579 2e-56 188.6 Myb-like DNA-binding domain
XP_057770503.1 Pfam PF13921 Myb_DNA-bind_6 Domain 536 596 3.9e-46 155.8 Myb-like DNA-binding domain
XP_057770503.1 Pfam PF00249 Myb_DNA-binding Domain 587 627 2e-56 188.6 Myb-like DNA-binding domain
XP_057770503.1 Pfam PF13921 Myb_DNA-bind_6 Domain 588 631 3.9e-46 155.8 Myb-like DNA-binding domain
XP_057770505.1 Pfam PF13921 Myb_DNA-bind_6 Domain 388 438 3.3e-46 156.0 Myb-like DNA-binding domain
XP_057770505.1 Pfam PF00249 Myb_DNA-binding Domain 428 472 1.7e-56 188.8 Myb-like DNA-binding domain
XP_057770505.1 Pfam PF13921 Myb_DNA-bind_6 Domain 430 488 3.3e-46 156.0 Myb-like DNA-binding domain
XP_057770505.1 Pfam PF00249 Myb_DNA-binding Domain 480 526 1.7e-56 188.8 Myb-like DNA-binding domain
XP_057770505.1 Pfam PF13921 Myb_DNA-bind_6 Domain 483 533 3.3e-46 156.0 Myb-like DNA-binding domain
XP_057770505.1 Pfam PF00249 Myb_DNA-binding Domain 534 579 1.7e-56 188.8 Myb-like DNA-binding domain
XP_057770505.1 Pfam PF13921 Myb_DNA-bind_6 Domain 536 596 3.3e-46 156.0 Myb-like DNA-binding domain
XP_057770505.1 Pfam PF00249 Myb_DNA-binding Domain 587 627 1.7e-56 188.8 Myb-like DNA-binding domain
XP_057770505.1 Pfam PF13921 Myb_DNA-bind_6 Domain 588 631 3.3e-46 156.0 Myb-like DNA-binding domain
XP_057770506.1 Pfam PF13921 Myb_DNA-bind_6 Domain 388 438 3.2e-46 156.0 Myb-like DNA-binding domain
XP_057770506.1 Pfam PF00249 Myb_DNA-binding Domain 428 472 1.7e-56 188.8 Myb-like DNA-binding domain
XP_057770506.1 Pfam PF13921 Myb_DNA-bind_6 Domain 430 488 3.2e-46 156.0 Myb-like DNA-binding domain
XP_057770506.1 Pfam PF00249 Myb_DNA-binding Domain 480 526 1.7e-56 188.8 Myb-like DNA-binding domain
XP_057770506.1 Pfam PF13921 Myb_DNA-bind_6 Domain 483 533 3.2e-46 156.0 Myb-like DNA-binding domain
XP_057770506.1 Pfam PF00249 Myb_DNA-binding Domain 534 579 1.7e-56 188.8 Myb-like DNA-binding domain
XP_057770506.1 Pfam PF13921 Myb_DNA-bind_6 Domain 536 596 3.2e-46 156.0 Myb-like DNA-binding domain
XP_057770506.1 Pfam PF00249 Myb_DNA-binding Domain 587 627 1.7e-56 188.8 Myb-like DNA-binding domain
XP_057770506.1 Pfam PF13921 Myb_DNA-bind_6 Domain 588 631 3.2e-46 156.0 Myb-like DNA-binding domain
XP_057770507.1 Pfam PF13921 Myb_DNA-bind_6 Domain 388 438 2.9e-46 156.2 Myb-like DNA-binding domain
XP_057770507.1 Pfam PF00249 Myb_DNA-binding Domain 428 472 1.5e-56 189.0 Myb-like DNA-binding domain
XP_057770507.1 Pfam PF13921 Myb_DNA-bind_6 Domain 430 488 2.9e-46 156.2 Myb-like DNA-binding domain
XP_057770507.1 Pfam PF00249 Myb_DNA-binding Domain 480 526 1.5e-56 189.0 Myb-like DNA-binding domain
XP_057770507.1 Pfam PF13921 Myb_DNA-bind_6 Domain 483 533 2.9e-46 156.2 Myb-like DNA-binding domain
XP_057770507.1 Pfam PF00249 Myb_DNA-binding Domain 534 579 1.5e-56 189.0 Myb-like DNA-binding domain
XP_057770507.1 Pfam PF13921 Myb_DNA-bind_6 Domain 536 596 2.9e-46 156.2 Myb-like DNA-binding domain
XP_057770507.1 Pfam PF00249 Myb_DNA-binding Domain 587 627 1.5e-56 189.0 Myb-like DNA-binding domain
XP_057770507.1 Pfam PF13921 Myb_DNA-bind_6 Domain 588 631 2.9e-46 156.2 Myb-like DNA-binding domain
XP_057770508.1 Pfam PF13921 Myb_DNA-bind_6 Domain 388 438 2.9e-46 156.2 Myb-like DNA-binding domain
XP_057770508.1 Pfam PF00249 Myb_DNA-binding Domain 428 472 1.5e-56 189.0 Myb-like DNA-binding domain
XP_057770508.1 Pfam PF13921 Myb_DNA-bind_6 Domain 430 488 2.9e-46 156.2 Myb-like DNA-binding domain
XP_057770508.1 Pfam PF00249 Myb_DNA-binding Domain 480 526 1.5e-56 189.0 Myb-like DNA-binding domain
XP_057770508.1 Pfam PF13921 Myb_DNA-bind_6 Domain 483 533 2.9e-46 156.2 Myb-like DNA-binding domain
XP_057770508.1 Pfam PF00249 Myb_DNA-binding Domain 534 579 1.5e-56 189.0 Myb-like DNA-binding domain
XP_057770508.1 Pfam PF13921 Myb_DNA-bind_6 Domain 536 596 2.9e-46 156.2 Myb-like DNA-binding domain
XP_057770508.1 Pfam PF00249 Myb_DNA-binding Domain 587 627 1.5e-56 189.0 Myb-like DNA-binding domain
XP_057770508.1 Pfam PF13921 Myb_DNA-bind_6 Domain 588 631 2.9e-46 156.2 Myb-like DNA-binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA
XM_057914520.1
AGGCCCAACCCTCCTCTCCCTCTTTCTTGTTTCATTGCTGGCGGAAGACTCCTTCTTCTTCTCAATTACTCACGGAAGGGTTGATATAGTAGAACATGTGATACTACTGTTCTTGGCGGGGAAGTGGCAAAATTGCAATAGATTTGAAGATGTCTTCGTCTAAGGGAGTCTCCGATTCTGACTCCGACTCCGACGATGGATTCAACGAAGACATGGAGGCGCTACGAAGGGCTTGCCAGCTGACCGGCGAAACGCCTGCC...
XM_057914522.1
AGGCCCAACCCTCCTCTCCCTCTTTCTTGTTTCATTGCTGGCGGAAGACTCCTTCTTCTTCTCAATTACTCACGGAAGGGTTGATATAGTAGAACATGTGATACTACTGTTCTTGGCGGGGAAGTGGCAAAATTGCAATAGATTTGAAGATGTCTTCGTCTAAGGGAGTCTCCGATTCTGACTCCGACTCCGACGATGGATTCAACGAAGACATGGAGGCGCTACGAAGGGCTTGCCAGCTGACCGGCGAAACGCCTGCC...

CDS

5 records

下载 CDS FASTA
LOC130990303
ATGTCTTCGTCTAAGGGAGTCTCCGATTCTGACTCCGACTCCGACGATGGATTCAACGAAGACATGGAGGCGCTACGAAGGGCTTGCCAGCTGACCGGCGAAACGCCTGCCTCCGCAGCCGCCGCCGGTGGCATTGCCAGCGAGGCTTCCTCTTCCGAGGGGGAATCCGACGGAGATGAAGACAATGACCTTCAATTAGTTCGAAGCATTCAGAATCGCTTCGCCGTTCCCATGGATGTGGGGGAAGAGCCTCTGAAGAT...
LOC130990303
ATGTCTTCGTCTAAGGGAGTCTCCGATTCTGACTCCGACTCCGACGATGGATTCAACGAAGACATGGAGGCGCTACGAAGGGCTTGCCAGCTGACCGGCGAAACGCCTGCCTCCGCAGCCGCCGCCGGTGGCATTGCCAGCGAGGCTTCCTCTTCCGAGGGGGAATCCGACGGAGATGAAGACAATGACCTTCAATTAGTTCGAAGCATTCAGAATCGCTTCGCCGTTCCCATGGATGTGGGGGAAGAGCCTCTGAAGAT...

Protein

5 records

下载 Protein FASTA
XP_057770503.1
MSSSKGVSDSDSDSDDGFNEDMEALRRACQLTGETPASAAAAGGIASEASSSEGESDGDEDNDLQLVRSIQNRFAVPMDVGEEPLKMKPLCTVLPDLSDSDDIEEDYETLRAIQRRFAAYNDGSLKENFEGFSHRPEQVGATIIDSEKETSNSFVERTNAREGFLNCVDTSEPTGKKVEVCDNAGGSSDTVEWNELGVDDVAELPLRTSHFPNSALAFVDAIKKNRSCQKLIRSKMMQMEARMEELGKLIERVRILKDFQ...
XP_057770505.1
MSSSKGVSDSDSDSDDGFNEDMEALRRACQLTGETPASAAAAGGIASEASSSEGESDGDEDNDLQLVRSIQNRFAVPMDVGEEPLKMKPLCTVLPDLSDSDDIEEDYETLRAIQRRFAAYNDGSLKENFEGFSHRPEQVGATIIDSEKETSNSFVERTNAREGFLNCVDTSEPTGKKVEVCDNAGGSSDTVEWNELGVDDVAELPLRTSHFPNSALAFVDAIKKNRSCQKLIRSKMMQMEARMEELGKLIERVRILKDFQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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