当前解析结果
SmilChr06G001719| 统一新 Gene ID | SmilChr06G001719 |
|---|---|
| 名称 | SmilChr06G001719 |
| 描述 | kinesin-like protein KIN-14K |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 19805275 - 19814163 / - |
| NCBI Gene ID | LOC130990370 |
|---|---|
| GeneID | 130990370 |
| locus_tag | - |
| NCBI Name | LOC130990370 |
| 原始查询 | SmilChr06G001719 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | kinesin-like protein KIN-14K |
| 产物 | kinesin-like protein KIN-14K |
| Arabidopsis | AT1G18410 (AT1G18410)P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838422] identity=57.8; qcov=0.507; evalue=0; confidence=medium |
| Rice | Os01g0744000 (KIN14C)- identity=64.1; qcov=0.391; evalue=0; confidence=low |
| GO | GO:0003777 (microtubule motor activity); GO:0005524 (ATP binding); GO:0007018 (microtubule-based movement); GO:0008017 (microtubule binding) |
| KEGG | - |
| Pfam | PF00225 (Kinesin); PF00307 (CH); PF16796 (Microtub_bd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990370 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoskeleton | 细胞骨架 | 1.00000 | XP_057770575.1 |
| 2 | Phragmoplast | Phragmoplast | 0.80000 | XP_057770575.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057770575.1 |
| 4 | Spindle | Spindle | 0.20000 | XP_057770575.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057770575.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:19807489 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B24,B69,C30 |
Chr6:19807507 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr6:19807588 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B131,B52,B77,C37,C43 |
Chr6:19808041 |
AT |
A |
1bp_deletion | frameshift_variant | 4 | A18,B122,B133,C28 |
Chr6:19808084 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B24,B69,C30 |
Chr6:19808138 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A20,B93,C17,D10 |
Chr6:19808494 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B52 |
Chr6:19808540 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C17 |
Chr6:19808596 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr6:19809373 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A16,C26 |
Chr6:19809553 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr6:19809568 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B93,C17 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057770575.1PF00307
CH 34-131 aa
PF16796
Microtub_bd 917-1076 aa
PF00225
Kinesin 936-1255 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770575.1 |
Pfam | PF00307 |
CH | Domain | 34 | 131 | 2.7e-12 | 47.6 | Calponin homology (CH) domain |
XP_057770575.1 |
Pfam | PF16796 |
Microtub_bd | Domain | 917 | 1076 | 9.1e-44 | 149.8 | Microtubule binding |
XP_057770575.1 |
Pfam | PF00225 |
Kinesin | Domain | 936 | 1255 | 9.4e-108 | 360.8 | Kinesin motor domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。