Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001720`

染色体: Chr06 坐标: 19815104-19823270 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001720`
名称	SmilChr06G001720
描述	uncharacterized SmilChr06G001720
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	19815104 - 19823270 / `-`

ID 对照

NCBI Gene ID	`LOC130990371`
GeneID	`130990371`
locus_tag	`-`
NCBI Name	`LOC130990371`
原始查询	`SmilChr06G001720`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:837434]; symbol=AT1G09150; hit=AT1G09150; species=arabidopsis; confidence=high
产物	pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:837434]; symbol=AT1G09150; hit=AT1G09150; species=arabidopsis; confidence=high
Arabidopsis	`AT1G09150` (AT1G09150) pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:837434] identity=86.7; qcov=1; evalue=3.12e-118; confidence=high
Rice	`Os01g0314300` - identity=87.8; qcov=1; evalue=3.9e-113; confidence=high
GO	GO:0001731 (formation of translation preinitiation complex); GO:0003723 (RNA binding)
KEGG	-
Pfam	PF01472 (PUA); PF17832 (Pre-PUA); PF26292 (PUA_elF2D)
InterPro	-
eggNOG	-
NR	GeneID:130990371

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057770577.1`
2	Nucleus	细胞核	0.80000	`XP_057770577.1`
3	Cytosol	细胞质基质	0.60000	`XP_057770576.1`
4	Mitochondrion	线粒体	0.20000	`XP_057770576.1`
5	Mitochondrion matrix	线粒体基质	0.20000	`XP_057770576.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:19815284`	`G`	`A`	EMS_canonical_SNV	stop_gained	2	C26,C53
`Chr6:19815284`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C26,C53
`Chr6:19815287`	`T`	`TA`	1bp_insertion	frameshift_variant	36	A14,A21,A4,A9,B1,B108,B117,B130,B131,B132,B14,B19,B25,B33,B52,B59,B68,B7,B71,B77,B87,B96,C11,C12,C27,C30,C37,C50,C56,C63,C70,C77,C80,D10,D11,D9
`Chr6:19815289`	`A`	`AC`	1bp_insertion	frameshift_variant	4	A21,B1,B14,B59
`Chr6:19815289`	`A`	`AC`	1bp_insertion	CDS_variant	4	A21,B1,B14,B59
`Chr6:19815313`	`GC`	`G`	1bp_deletion	frameshift_variant	40	B10,B108,B113,B125,B13,B132,B133,B15,B22,B36,B38,B39,B48,B53,B63,B64,B70,B74,B8,B81,B85,B90,B92,B94,B95,B97,C12,C28,C3,C39,C45,C46,C48,C56,C6,C7,C72,C76,C79,D7
`Chr6:19815344`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D4
`Chr6:19815357`	`C`	`CT`	1bp_insertion	frameshift_variant	33	B107,B128,B24,B3,B32,B4,B42,B47,B55,B56,B61,B70,B8,B9,B96,C1,C10,C11,C18,C2,C20,C24,C27,C47,C49,C52,C69,C71,C72,C76,C84,C87,D1
`Chr6:19815421`	`CAG`	`C`	2bp_deletion	frameshift_variant	106	A1,A14,A15,A18,A2,A3,A4,A8,A9,B10,B100,B101,B103,B108,B111,B113,B12,B124,B125,B127,B129,B13,B132,B133,B139,B140,B15,B19,B2,B22,B27,B29,B3,B30,B33,B34,B36,B38,B39,B45,B47,B48,B53,B57,B58,B63,B64,B66,B67,B69,B7,B70,B72,B73,B74,B75,B80,B81,B85,B87,B88,B89,B9,B90,B92,B94,B95,B98,B99,C10,C12,C13,C14,C2,C23,C28,C3,C30,C35,C38,C39,C41,C42,C44,C45,C46,C47,C48,C5,C55,C56,C59,C60,C62,C7,C71,C72,C75,C76,C79,C82,C9,D1,D5,D7,D9
`Chr6:19815429`	`CT`	`C`	1bp_deletion	frameshift_variant	163	A10,A13,A14,A15,A16,A18,A20,A21,A22,A23,A24,A25,A4,A5,A6,A7,A8,A9,B101,B104,B106,B107,B108,B109,B110,B114,B115,B117,B118,B119,B120,B122,B123,B124,B125,B127,B128,B130,B134,B137,B14,B15,B16,B17,B19,B2,B20,B21,B24,B28,B29,B3,B30,B32,B34,B35,B4,B41,B42,B43,B44,B45,B46,B47,B48,B49,B5,B52,B53,B54,B55,B56,B58,B6,B60,B61,B65,B66,B68,B69,B7,B70,B71,B74,B75,B76,B77,B79,B8,B80,B82,B83,B85,B86,B87,B88,B9,B90,B91,B92,B95,B96,B99,C1,C10,C11,C12,C15,C16,C18,C2,C20,C23,C24,C26,C27,C28,C30,C31,C35,C4,C42,C43,C46,C47,C48,C49,C50,C51,C52,C53,C57,C58,C6,C60,C61,C62,C63,C64,C65,C66,C67,C69,C71,C72,C73,C74,C76,C77,C78,C81,C84,C85,C86,C87,D1,D10,D11,D2,D5,D6,D8,D9
`Chr6:19815524`	`G`	`A`	EMS_canonical_SNV	stop_gained	216	A1,A10,A11,A13,A14,A15,A16,A18,A19,A20,A21,A22,A23,A24,A25,A3,A4,A5,A6,A7,A8,A9,B101,B103,B104,B107,B108,B109,B11,B110,B112,B113,B114,B117,B119,B12,B120,B121,B122,B123,B126,B127,B128,B129,B13,B131,B132,B133,B134,B135,B136,B137,B138,B139,B14,B140,B15,B16,B17,B18,B19,B20,B21,B24,B25,B26,B27,B28,B29,B3,B30,B31,B32,B33,B34,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B49,B5,B50,B52,B54,B55,B56,B58,B59,B6,B60,B61,B62,B63,B66,B67,B68,B69,B7,B71,B72,B73,B75,B77,B78,B79,B8,B80,B81,B82,B83,B84,B85,B87,B88,B9,B90,B91,B92,B93,B96,B97,B98,B99,C1,C10,C11,C13,C14,C15,C17,C19,C2,C20,C22,C23,C24,C26,C27,C28,C3,C30,C31,C32,C33,C35,C37,C38,C39,C4,C41,C42,C43,C45,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C6,C60,C61,C62,C63,C64,C65,C66,C67,C68,C69,C70,C71,C72,C74,C75,C76,C77,C79,C8,C80,C83,C84,C85,C86,C87,C9,D1,D10,D11,D2,D3,D5,D6,D7,D8,D9
`Chr6:19816865`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C60

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770576.1

247 aa

124

247

Pre-PUA

PUA

PUA_elF2D

PF17832 Pre-PUA 7-88 aa PF01472 PUA 92-170 aa PF26292 PUA_elF2D 100-172 aa

XP_057770577.1

181 aa

181

Pre-PUA

PUA

PUA_elF2D

PF17832 Pre-PUA 7-88 aa PF01472 PUA 92-170 aa PF26292 PUA_elF2D 100-172 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770576.1`	Pfam	`PF17832`	Pre-PUA	Domain	7	88	2.9e-28	99.0	Pre-PUA-like domain
`XP_057770576.1`	Pfam	`PF01472`	PUA	Domain	92	170	1.3e-16	61.0	PUA domain
`XP_057770576.1`	Pfam	`PF26292`	PUA_elF2D	Domain	100	172	8.6e-13	48.6	elF2D, PUA domain
`XP_057770577.1`	Pfam	`PF17832`	Pre-PUA	Domain	7	88	1.9e-28	99.6	Pre-PUA-like domain
`XP_057770577.1`	Pfam	`PF01472`	PUA	Domain	92	170	6.8e-17	61.9	PUA domain
`XP_057770577.1`	Pfam	`PF26292`	PUA_elF2D	Domain	100	172	4.6e-13	49.5	elF2D, PUA domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057914594.1
ATTAAAATTAACCTTATGAATCTAAAGAGTAAGTATTTACCCCGTTTATCGTATTTAGGGCAGTCGCCAATACAAATTCAACCCACTAAACTCTTTTTTGGCTTAAATAGAACGCAGTCATCCAAATTTTGAACCCATCGATTCGTCCCACTGAACCTATTCTCTCCCACTCATTCATGCCAATTTGGGTCTCCACATAACCTACAGCCTTACTCTCTCCCTCTCTGTAAGAATGTTCAAAAAGTTCTCATCCGAAGAAG...

XM_057914593.1
TTATCGTATTTAGGGCAGTCGCCAATACAAATTCAACCCACTAAACTCTTTTTTGGCTTAAATAGAACGCAGTCATCCAAATTTTGAACCCATCGATTCGTCCCACTGAACCTATTCTCTCCCACTCATTCATGCCAATTTGGGTCTCCACATAACCTACAGCCTTACTCTCTCCCTCTCTGTAAGAATGTTCAAAAAGTTCTCATCCGAAGAAGTTTCTGCGCAAAATCAAGTGAAGGCATCTGTGCAGCGCAAAATTC...

CDS

2 records

下载 CDS FASTA

LOC130990371
ATGTTCAAAAAGTTCTCATCCGAAGAAGTTTCTGCGCAAAATCAAGTGAAGGCATCTGTGCAGCGCAAAATTCGGCAAAGTATTGCGGAAGAGTATCCAGGACTTGAACCTGTTTTGGAAGATTTGTTGCCAAAAAAATCACCACTGATTGTTGCAAAATGCCCAAATCATCTAAATTTGGTTTTGGTGAACAATGTTCCACTTTTTTTCAACATACGTGATGGACCTTATATGCCAACACTACGACTCCTTCATCAGTA...

Protein

2 records

下载 Protein FASTA

XP_057770576.1
MFKKFSSEEVSAQNQVKASVQRKIRQSIAEEYPGLEPVLEDLLPKKSPLIVAKCPNHLNLVLVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIRFVLAGANIMCPGLTSPGGALDDEVEAETPVAIMAEGKQNALAIGFTKMSAKDIRSINKGIGVDNMHYLNDGLWKVCTLCFLLYPQTLCKTKNTLVFTTFHRWSVSIKKKNERAVDASVGDKPRAQLVIIKSFKQQSLHMFWMVRC

XP_057770577.1
MFKKFSSEEVSAQNQVKASVQRKIRQSIAEEYPGLEPVLEDLLPKKSPLIVAKCPNHLNLVLVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIRFVLAGANIMCPGLTSPGGALDDEVEAETPVAIMAEGKQNALAIGFTKMSAKDIRSINKGIGVDNMHYLNDGLWKMERLD

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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