Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001723`

染色体: Chr06 坐标: 19861362-19868867 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001723`
名称	SmilChr06G001723
描述	glycosyltransferase BC10-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	19861362 - 19868867 / `+`

ID 对照

NCBI Gene ID	`LOC130990374`
GeneID	`130990374`
locus_tag	`-`
NCBI Name	`LOC130990374`
原始查询	`SmilChr06G001723`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	glycosyltransferase BC10-like
产物	glycosyltransferase BC10-like
Arabidopsis	`AT1G68390` (AT1G68390) Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:843168] identity=63; qcov=0.768; evalue=1.12e-149; confidence=high
Rice	`Os03g0731050` - identity=56.5; qcov=0.783; evalue=1.04e-132; confidence=high
GO	GO:0016020 (membrane); GO:0016757 (glycosyltransferase activity)
KEGG	-
Pfam	PF02485 (Branch)
InterPro	-
eggNOG	-
NR	GeneID:130990374

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057770579.1`
2	Golgi stack	高尔基堆	0.20000	`XP_057770579.1`
3	Nucleus	细胞核	0.00000	`XP_057770579.1`
4	Chromosome	染色体	0.00000	`XP_057770579.1`
5	Centromere	着丝粒	0.00000	`XP_057770579.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:19862380`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A2,C42
`Chr6:19862423`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D5
`Chr6:19862566`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B79
`Chr6:19862673`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B77
`Chr6:19862791`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D3
`Chr6:19862809`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B101,B82,C27,C82
`Chr6:19868206`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B56,B96,C85
`Chr6:19868289`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B71,D4
`Chr6:19868311`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B71,C22,C77
`Chr6:19868317`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr6:19868369`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B3,B69
`Chr6:19868422`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B77,B78,C18,C63

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770579.1

405 aa

202

405

Branch

PF02485 Branch 138-365 aa

XP_057770580.1

405 aa

202

405

Branch

PF02485 Branch 138-365 aa

XP_057770581.1

405 aa

202

405

Branch

PF02485 Branch 138-365 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770579.1`	Pfam	`PF02485`	Branch	Family	138	365	1.1e-82	278.1	Core-2/I-Branching enzyme
`XP_057770580.1`	Pfam	`PF02485`	Branch	Family	138	365	1.1e-82	278.1	Core-2/I-Branching enzyme
`XP_057770581.1`	Pfam	`PF02485`	Branch	Family	138	365	1.1e-82	278.1	Core-2/I-Branching enzyme

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057914597.1
CCCCCCCCTCTCTCTCTCGCCATTCTTGAAACAAATTTTCTTACTTTCCAAAATTTCTTCAAGGAAATGACACACAGTCGTGCAACCTTTGACGCCACCTTACCACTCCGCCAATATGATCAACAGGTAATTAATGAGGTGTGCCCCTATAATGACCCTTGTATCTCATGTTTGTTAGAAGGAATCCGTGGCTTGAATTTTGGAATCTTGAAGGATTGCAGCCTCAAGCTTCTTCCTCCTCACACCAACGACACTCCCAA...

XM_057914596.1
CTCTCGCCATTCTTGAAACAAATTTTCTTACTTTCCAAAATTTCTTCAAGGAAATGACACACAGTCGTGCAACCTTTGACGCCACCTTACCACTCCGCCAATATGATCAACAGAAGGAATCCGTGGCTTGAATTTTGGAATCTTGAAGGATTGCAGCCTCAAGCTTCTTCCTCCTCACACCAACGACACTCCCAAACACACTCATGTGATCACGTATTCTCATACAAAATAATACCCAGAAAATGAAGAAACAACACCAA...

CDS

3 records

下载 CDS FASTA

LOC130990374
ATGAAGAAACAACACCAAACACAAGACCAACAACAACAGCTCACGAAGCAGCTCCACACCTCTCCGAGCCTCCTCCAAAACCTCGTCATCTACTTCCTCTTCTTCGGCTCCGGCCTCGTCGTCGGCCTCACGCTCACCTTCTACCTGCCCCCGAGCCTCCAGTTTGCACAATTCTCCTCGGGCGCCATTGCAACAACAACAACAACAACAACGACAACAACAGCAACAACGCCGTCTCCTCCTCCTCCTCCTCCCCCTTT...

Protein

3 records

下载 Protein FASTA

XP_057770579.1
MKKQHQTQDQQQQLTKQLHTSPSLLQNLVIYFLFFGSGLVVGLTLTFYLPPSLQFAQFSSGAIATTTTTTTTTTATTPSPPPPPPPLPPPPPQQRAGLREYLRVESSAMHDMTEAELLWRASMKPKIQEFPFRRTPKVAFMFLAKGDLPLAPLWELFFRGHQGLYSIYVHSQPSYKGAFPQGSVFHGRRIPSKEVEWGKINMVEAERRLLANALLDLSNQRFVLLSEACIPLFNFPTIYSYLMKSRTSFVESYDKEGPVG...

XP_057770580.1
MKKQHQTQDQQQQLTKQLHTSPSLLQNLVIYFLFFGSGLVVGLTLTFYLPPSLQFAQFSSGAIATTTTTTTTTTATTPSPPPPPPPLPPPPPQQRAGLREYLRVESSAMHDMTEAELLWRASMKPKIQEFPFRRTPKVAFMFLAKGDLPLAPLWELFFRGHQGLYSIYVHSQPSYKGAFPQGSVFHGRRIPSKEVEWGKINMVEAERRLLANALLDLSNQRFVLLSEACIPLFNFPTIYSYLMKSRTSFVESYDKEGPVG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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