当前解析结果
SmilChr06G001732| 统一新 Gene ID | SmilChr06G001732 |
|---|---|
| 名称 | SmilChr06G001732 |
| 描述 | LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 19935409 - 19937779 / - |
| NCBI Gene ID | LOC130990382 |
|---|---|
| GeneID | 130990382 |
| locus_tag | - |
| NCBI Name | LOC130990382 |
| 原始查询 | SmilChr06G001732 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 |
| 产物 | LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 |
| Arabidopsis | AT1G18390 (AT1G18390)Serine/Threonine kinase family catalytic domain protein [Source:NCBI gene (formerly Entrezgene);Acc:838420] identity=44.8; qcov=1.08; evalue=8.33e-169; confidence=medium |
| Rice | Os01g0689900 (OsWAK10)- identity=42.1; qcov=1.07; evalue=4.67e-150; confidence=medium |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0030247 (polysaccharide binding) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF13947 (GUB_WAK_bind) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990382 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057770602.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057770602.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057770602.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057770602.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057770602.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:19935507 |
C |
CA |
1bp_insertion | frameshift_variant | 7 | A13,B110,B111,B138,B30,B93,C73 |
Chr6:19935509 |
C |
CA |
1bp_insertion | frameshift_variant | 6 | A13,B110,B111,B138,B30,B93 |
Chr6:19935576 |
A |
AGC |
2bp_insertion | frameshift_variant | 7 | B50,C10,C19,C2,C48,C61,C83 |
Chr6:19935594 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr6:19935597 |
A |
AAT |
2bp_insertion | frameshift_variant | 1 | D11 |
Chr6:19935597 |
A |
AAT |
2bp_insertion | CDS_variant | 1 | D11 |
Chr6:19935942 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
Chr6:19935957 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C34 |
Chr6:19936020 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B24,B69,C17,C30,D4 |
Chr6:19936130 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | C23 |
Chr6:19936130 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C23 |
Chr6:19936236 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057770602.1PF13947
GUB_WAK_bind 24-86 aa
PF00069
Pkinase 289-555 aa
PF07714
PK_Tyr_Ser-Thr 291-557 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770602.1 |
Pfam | PF13947 |
GUB_WAK_bind | Domain | 24 | 86 | 1.2e-11 | 45.5 | Wall-associated receptor kinase galacturonan-binding |
XP_057770602.1 |
Pfam | PF00069 |
Pkinase | Domain | 289 | 555 | 2.3e-46 | 159.1 | Protein kinase domain |
XP_057770602.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 291 | 557 | 1.8e-47 | 162.6 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。