当前解析结果
SmilChr06G001745| 统一新 Gene ID | SmilChr06G001745 |
|---|---|
| 名称 | SmilChr06G001745 |
| 描述 | protein ENHANCER OF LHP1 1 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 20203343 - 20209404 / + |
| NCBI Gene ID | LOC130987394 |
|---|---|
| GeneID | 130987394 |
| locus_tag | - |
| NCBI Name | LOC130987394 |
| 原始查询 | SmilChr06G001745 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein ENHANCER OF LHP1 1 |
| 产物 | protein ENHANCER OF LHP1 1 |
| Arabidopsis | AT3G42660 (AT3G42660)transducin family protein / WD-40 repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:823286] identity=57.5; qcov=0.994; evalue=0; confidence=high |
| Rice | Os09g0241100 (OsWD40-166)- identity=54.8; qcov=1.05; evalue=0; confidence=high |
| GO | GO:0000278 (mitotic cell cycle); GO:0003682 (chromatin binding); GO:0005515 (protein binding); GO:0006261 (DNA-templated DNA replication); GO:0006281 (DNA repair); GO:0043596 (nuclear replication fork) |
| KEGG | - |
| Pfam | PF00400 (WD40); PF08662 (eIF2A); PF12341 (Mcl1_mid); PF12894 (ANAPC4_WD40); PF20946 (Ctf4_C); PF24817 (WD40_WDHD1_1st) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987394 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057766895.1 |
| 2 | Chromosome | 染色体 | 0.40000 | XP_057766895.1 |
| 3 | Nucleoplasm | 核质 | 0.40000 | XP_057766895.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057766895.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057766895.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:20203740 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D5 |
Chr6:20203779 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B77,C18,C63 |
Chr6:20204162 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B19,C33 |
Chr6:20204199 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B12,B37,B70,B82,B97 |
Chr6:20204207 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B104,B70,C62 |
Chr6:20204256 |
C |
CCT |
2bp_insertion | frameshift_variant | 2 | A4,B7 |
Chr6:20204256 |
C |
CCT |
2bp_insertion | CDS_variant | 2 | A4,B7 |
Chr6:20204425 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B101,B82,C82 |
Chr6:20204429 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C50,C57 |
Chr6:20204518 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B101,B82,C82 |
Chr6:20204609 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B101,B82,C82 |
Chr6:20204718 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A20 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057766895.1PF24817
WD40_WDHD1_1st 17-306 aa
PF00400
WD40 58-90 aa
PF00400
WD40 139-164 aa
PF12894
ANAPC4_WD40 202-289 aa
PF08662
eIF2A 202-295 aa
PF00400
WD40 237-267 aa
PF12341
Mcl1_mid 423-706 aa
PF20946
Ctf4_C 715-818 aa
XP_057766897.1PF24817
WD40_WDHD1_1st 17-306 aa
PF00400
WD40 58-90 aa
PF00400
WD40 139-164 aa
PF12894
ANAPC4_WD40 202-289 aa
PF08662
eIF2A 202-295 aa
PF00400
WD40 237-267 aa
PF12341
Mcl1_mid 423-706 aa
PF20946
Ctf4_C 715-818 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057766895.1 |
Pfam | PF24817 |
WD40_WDHD1_1st | Repeat | 17 | 306 | 6.8e-77 | 259.2 | WDHD1 first WD40 domain |
XP_057766895.1 |
Pfam | PF00400 |
WD40 | Repeat | 58 | 90 | 4.3e-32 | 109.9 | WD domain, G-beta repeat |
XP_057766895.1 |
Pfam | PF00400 |
WD40 | Repeat | 139 | 164 | 4.3e-32 | 109.9 | WD domain, G-beta repeat |
XP_057766895.1 |
Pfam | PF12894 |
ANAPC4_WD40 | Repeat | 202 | 289 | 9.4e-20 | 71.4 | Anaphase-promoting complex subunit 4 WD40 domain |
XP_057766895.1 |
Pfam | PF08662 |
eIF2A | Repeat | 202 | 295 | 1.4e-07 | 32.3 | Eukaryotic translation initiation factor eIF2A |
XP_057766895.1 |
Pfam | PF00400 |
WD40 | Repeat | 237 | 267 | 4.3e-32 | 109.9 | WD domain, G-beta repeat |
XP_057766895.1 |
Pfam | PF12341 |
Mcl1_mid | Repeat | 423 | 706 | 4.2e-91 | 306.1 | Minichromosome loss protein, Mcl1, middle region |
XP_057766895.1 |
Pfam | PF20946 |
Ctf4_C | Domain | 715 | 818 | 8.6e-14 | 52.3 | DNA polymerase alpha-binding protein Ctf4, C-terminal domain |
XP_057766897.1 |
Pfam | PF24817 |
WD40_WDHD1_1st | Repeat | 17 | 306 | 6.8e-77 | 259.2 | WDHD1 first WD40 domain |
XP_057766897.1 |
Pfam | PF00400 |
WD40 | Repeat | 58 | 90 | 4.3e-32 | 109.9 | WD domain, G-beta repeat |
XP_057766897.1 |
Pfam | PF00400 |
WD40 | Repeat | 139 | 164 | 4.3e-32 | 109.9 | WD domain, G-beta repeat |
XP_057766897.1 |
Pfam | PF12894 |
ANAPC4_WD40 | Repeat | 202 | 289 | 9.4e-20 | 71.4 | Anaphase-promoting complex subunit 4 WD40 domain |
XP_057766897.1 |
Pfam | PF08662 |
eIF2A | Repeat | 202 | 295 | 1.4e-07 | 32.3 | Eukaryotic translation initiation factor eIF2A |
XP_057766897.1 |
Pfam | PF00400 |
WD40 | Repeat | 237 | 267 | 4.3e-32 | 109.9 | WD domain, G-beta repeat |
XP_057766897.1 |
Pfam | PF12341 |
Mcl1_mid | Repeat | 423 | 706 | 4.2e-91 | 306.1 | Minichromosome loss protein, Mcl1, middle region |
XP_057766897.1 |
Pfam | PF20946 |
Ctf4_C | Domain | 715 | 818 | 8.6e-14 | 52.3 | DNA polymerase alpha-binding protein Ctf4, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。