当前解析结果
SmilChr06G001758| 统一新 Gene ID | SmilChr06G001758 |
|---|---|
| 名称 | SmilChr06G001758 |
| 描述 | uncharacterized SmilChr06G001758 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 20558078 - 20564271 / + |
| NCBI Gene ID | LOC130987405 |
|---|---|
| GeneID | 130987405 |
| locus_tag | - |
| NCBI Name | LOC130987405 |
| 原始查询 | SmilChr06G001758 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:833589]; symbol=AT5G35970; hit=AT5G35970; species=arabidopsis; confidence=high |
| 产物 | P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:833589]; symbol=AT5G35970; hit=AT5G35970; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G35970 (AT5G35970)P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:833589] identity=77.2; qcov=0.933; evalue=0; confidence=high |
| Rice | Os09g0130800- identity=68.2; qcov=0.951; evalue=0; confidence=high |
| GO | GO:0043139 (5'-3' DNA helicase activity) |
| KEGG | - |
| Pfam | PF00270 (DEAD); PF13086 (AAA_11); PF13087 (AAA_12); PF13245 (AAA_19); PF13604 (AAA_30) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987405 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057766911.1 |
| 2 | Mitochondrion | 线粒体 | 0.20000 | XP_057766911.1 |
| 3 | Chloroplast stroma | 叶绿体基质 | 0.20000 | XP_057766911.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057766911.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057766911.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:20558400 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C58 |
Chr6:20558470 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B101,B82,C34,C82,D4 |
Chr6:20558476 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B14,B59 |
Chr6:20558515 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B136 |
Chr6:20558533 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A14 |
Chr6:20558584 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr6:20558683 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B136 |
Chr6:20559613 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C10 |
Chr6:20560434 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A10 |
Chr6:20560688 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B139,B32,C4 |
Chr6:20560971 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B136 |
Chr6:20561970 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B101,B82,C34,C82,D4 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057766911.1PF13086
AAA_11 441-658 aa
PF13604
AAA_30 443-654 aa
PF00270
DEAD 444-512 aa
PF13245
AAA_19 452-627 aa
PF13087
AAA_12 666-870 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057766911.1 |
Pfam | PF13086 |
AAA_11 | Domain | 441 | 658 | 1.3e-56 | 192.9 | AAA domain |
XP_057766911.1 |
Pfam | PF13604 |
AAA_30 | Domain | 443 | 654 | 2.3e-13 | 51.0 | AAA domain |
XP_057766911.1 |
Pfam | PF00270 |
DEAD | Domain | 444 | 512 | 6.6e-09 | 36.4 | DEAD/DEAH box helicase |
XP_057766911.1 |
Pfam | PF13245 |
AAA_19 | Domain | 452 | 627 | 1.3e-09 | 39.1 | AAA domain |
XP_057766911.1 |
Pfam | PF13087 |
AAA_12 | Domain | 666 | 870 | 5.8e-53 | 180.1 | AAA domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。