Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001761`

染色体: Chr06 坐标: 20591004-20592457 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001761`
名称	SmilChr06G001761
描述	uncharacterized SmilChr06G001761
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	20591004 - 20592457 / `-`

ID 对照

NCBI Gene ID	`LOC130987441`
GeneID	`130987441`
locus_tag	`-`
NCBI Name	`LOC130987441`
原始查询	`SmilChr06G001761`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	polymerase delta 4 [Source:NCBI gene (formerly Entrezgene);Acc:837513]; symbol=POLD4; hit=AT1G09815; species=arabidopsis; confidence=medium
产物	polymerase delta 4 [Source:NCBI gene (formerly Entrezgene);Acc:837513]; symbol=POLD4; hit=AT1G09815; species=arabidopsis; confidence=medium
Arabidopsis	`AT1G09815` (POLD4) polymerase delta 4 [Source:NCBI gene (formerly Entrezgene);Acc:837513] identity=52.1; qcov=1.03; evalue=3.63e-40; confidence=medium
Rice	`Os09g0520100` - identity=43.5; qcov=1.16; evalue=3.29e-30; confidence=medium
GO	GO:0000731 (DNA synthesis involved in DNA repair); GO:0003887 (DNA-directed DNA polymerase activity); GO:0006261 (DNA-templated DNA replication); GO:0043625 (delta DNA polymerase complex)
KEGG	smil03030 (DNA replication - Salvia miltiorrhiza (redroot sage)); smil03410 (Base excision repair - Salvia miltiorrhiza (redroot sage)); smil03420 (Nucleotide excision repair - Salvia miltiorrhiza (redroot sage)); smil03430 (Mismatch repair - Salvia miltiorrhiza (redroot sage)); smil03440 (Homologous recombination - Salvia miltiorrhiza (redroot sage))
Pfam	PF04081 (DNA_pol_delta_4)
InterPro	-
eggNOG	-
NR	GeneID:130987441

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057766965.1`
2	Cytoplasm	细胞质	1.00000	`XP_057766965.1`
3	Cytosol	细胞质基质	0.60000	`XP_057766965.1`
4	Nucleoplasm	核质	0.40000	`XP_057766965.1`
5	Chromosome	染色体	0.00000	`XP_057766965.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:20591360`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr6:20591413`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C52
`Chr6:20592148`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A14
`Chr6:20592160`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B80,D5
`Chr6:20592178`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A10,B61
`Chr6:20592241`	`GA`	`G`	1bp_deletion	frameshift_variant	1	B97
`Chr6:20592241`	`GA`	`G`	1bp_deletion	CDS_variant	1	B97

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057766965.1

113 aa

113

DNA_pol_delta_4

PF04081 DNA_pol_delta_4 49-103 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057766965.1`	Pfam	`PF04081`	DNA_pol_delta_4	Family	49	103	2.9e-23	83.4	DNA polymerase delta, subunit 4

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057910982.1
GGCCATTAATTATTGAAGCCCATTATCTCGCCTTGTTCGTAGCATCGCGTCCCCCTCTCAACAAAACCCCGAATCCCTCAATTCAAATTTCAAATTCGAATCTTATCTACGACGGTGCGCCTCCTTAACCACCATCACCACCACTTCCATCACCATCTCCTCCGCCACTAATAATATTACCAATTAAATGGCGTCGGCAGGAGTGAAAGGATTTTTCCGGGAGAAGAAGAAAGGAAAGCCCGGAGCGGCGAAGAAGGGCA...

CDS

1 records

下载 CDS FASTA

LOC130987441
ATGGCGTCGGCAGGAGTGAAAGGATTTTTCCGGGAGAAGAAGAAAGGAAAGCCCGGAGCGGCGAAGAAGGGCAAACACTCCGCCTCCTGCGGCTCCGACGTCGTTCAGCCCCCGGCTCTTATCTCCAATGCTACTCTCGATCTTCAAGAAGAGAATGATGAGAAAGAGGAGGTTCTGAGGCAATTCGACATGAACATGGCTTATGGACCTTGCATAGGGATGAACCGACTGGAGCGCTGGGAGCGAGCTAATAAATTGGG...

Protein

1 records

下载 Protein FASTA

XP_057766965.1
MASAGVKGFFREKKKGKPGAAKKGKHSASCGSDVVQPPALISNATLDLQEENDEKEEVLRQFDMNMAYGPCIGMNRLERWERANKLGLNPPAQVENLLRMEKANYLCLWDARV

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器