Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001770`

染色体: Chr06 坐标: 20730919-20735694 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001770`
名称	SmilChr06G001770
描述	uncharacterized SmilChr06G001770
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	20730919 - 20735694 / `+`

ID 对照

NCBI Gene ID	`LOC130987411`
GeneID	`130987411`
locus_tag	`-`
NCBI Name	`LOC130987411`
原始查询	`SmilChr06G001770`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ankyrin [Source:NCBI gene (formerly Entrezgene);Acc:831273]; symbol=AT5G14230; hit=AT5G14230; species=arabidopsis; confidence=high
产物	ankyrin [Source:NCBI gene (formerly Entrezgene);Acc:831273]; symbol=AT5G14230; hit=AT5G14230; species=arabidopsis; confidence=high
Arabidopsis	`AT5G14230` (AT5G14230) ankyrin [Source:NCBI gene (formerly Entrezgene);Acc:831273] identity=60.2; qcov=0.985; evalue=0; confidence=high
Rice	`Os02g0457500` - identity=43.3; qcov=0.999; evalue=0; confidence=medium
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4)
InterPro	-
eggNOG	-
NR	GeneID:130987411

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057766918.1`
2	Cytoplasm	细胞质	0.80000	`XP_057766918.1`
3	Nucleus	细胞核	0.20000	`XP_057766918.1`
4	Chromosome	染色体	0.00000	`XP_057766918.1`
5	Centromere	着丝粒	0.00000	`XP_057766918.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:20731349`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A18,B108,B2,B33,C14
`Chr6:20731432`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B101,B82
`Chr6:20731438`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A19,A20,B104,D11,D4
`Chr6:20731493`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C62
`Chr6:20733705`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A1
`Chr6:20734117`	`AG`	`A`	1bp_deletion	frameshift_variant	1	B120
`Chr6:20734117`	`AG`	`A`	1bp_deletion	CDS_variant	1	B120
`Chr6:20734163`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B113,B65,C49
`Chr6:20734285`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C34
`Chr6:20734837`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr6:20735105`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B103,B64,B90,B92
`Chr6:20735112`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A21

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057766918.1

758 aa

379

758

Ank_2

Ank

Ank_2

Ank

Ank_2

Ank_3

Ank

Ank_4

Ank_2

Ank_3

Ank

PF12796 Ank_2 92-149 aa PF00023 Ank 93-120 aa PF12796 Ank_2 131-213 aa PF12796 Ank_2 160-257 aa PF12796 Ank_2 297-379 aa PF12796 Ank_2 351-410 aa PF00023 Ank 487-518 aa PF12796 Ank_2 492-585 aa PF13606 Ank_3 555-583 aa PF00023 Ank 555-585 aa PF13637 Ank_4 559-608 aa PF12796 Ank_2 559-636 aa PF13606 Ank_3 587-614 aa PF00023 Ank 588-618 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057766918.1`	Pfam	`PF12796`	Ank_2	Repeat	92	149	1.5e-64	215.3	Ankyrin repeats (3 copies)
`XP_057766918.1`	Pfam	`PF00023`	Ank	Repeat	93	120	3.6e-50	165.8	Ankyrin repeat
`XP_057766918.1`	Pfam	`PF12796`	Ank_2	Repeat	131	213	1.5e-64	215.3	Ankyrin repeats (3 copies)
`XP_057766918.1`	Pfam	`PF12796`	Ank_2	Repeat	160	257	1.5e-64	215.3	Ankyrin repeats (3 copies)
`XP_057766918.1`	Pfam	`PF12796`	Ank_2	Repeat	297	379	1.5e-64	215.3	Ankyrin repeats (3 copies)
`XP_057766918.1`	Pfam	`PF12796`	Ank_2	Repeat	351	410	1.5e-64	215.3	Ankyrin repeats (3 copies)
`XP_057766918.1`	Pfam	`PF00023`	Ank	Repeat	487	518	3.6e-50	165.8	Ankyrin repeat
`XP_057766918.1`	Pfam	`PF12796`	Ank_2	Repeat	492	585	1.5e-64	215.3	Ankyrin repeats (3 copies)
`XP_057766918.1`	Pfam	`PF13606`	Ank_3	Repeat	555	583	6.6e-38	124.7	Ankyrin repeat
`XP_057766918.1`	Pfam	`PF00023`	Ank	Repeat	555	585	3.6e-50	165.8	Ankyrin repeat
`XP_057766918.1`	Pfam	`PF13637`	Ank_4	Repeat	559	608	2.4e-39	133.2	Ankyrin repeats (many copies)
`XP_057766918.1`	Pfam	`PF12796`	Ank_2	Repeat	559	636	1.5e-64	215.3	Ankyrin repeats (3 copies)
`XP_057766918.1`	Pfam	`PF13606`	Ank_3	Repeat	587	614	6.6e-38	124.7	Ankyrin repeat
`XP_057766918.1`	Pfam	`PF00023`	Ank	Repeat	588	618	3.6e-50	165.8	Ankyrin repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057910935.1
AATTCCTTTGTATTCTTTTAACATTAAATATTGATGGCTTTTCTTTGCATTGATTTTTTTAAAAAAATCAAAGTGAATTTGGAAACACCAATCCAGTGGCACTGCGACGGTAGTGAAAAAGGAAGTTATTGCCCATAAAATAACCCCTCCGTCTCTGGCGCTCACTTATTTCAACTTCTCTCCCCCTCTCGACTTTCGTGCTCCCATTCTCTCTCTCTCTCTCTCTCAACCAACACTAACAACGTGAACTGAAAAAACAA...

CDS

1 records

下载 CDS FASTA

LOC130987411
ATGATGGTACTGAGGCACGGCGGAGGAGGGAGCGGCGGCGGATTTCTGGCTGGCAAGCAAGTTGTTCCGCTAAACTACGAAGCTGAGGTCTCGCAGCGCCTTCTAGATTCCGCGCTTTGCAATGATCTCAAATCGGCTCATGAATGCCTCGCCGATCCCTTCGTTGACGTCAACTACGTCGGTGCCGTTTGCTTGAAGATTCGGAAGACCGGCGTCGTTTTGCGGGAGGAATCGCAAGGCGAAGTGCGCGTCTGTTACGA...

Protein

1 records

下载 Protein FASTA

XP_057766918.1
MMVLRHGGGGSGGGFLAGKQVVPLNYEAEVSQRLLDSALCNDLKSAHECLADPFVDVNYVGAVCLKIRKTGVVLREESQGEVRVCYEEFRTDATALFVAVTNGNLALVRRLLSVGADVNLHLFRGYATAAAAREGHYEILEILLKAGASQPACEEALLEVSSHGHSQLVELLMASDLIRPHVAVHALVTACCRGFVEVVDTLIKCGVDANATDRVLLQSCKPSLHANADCTALVAAVVSRQISVVRLLLKAGVRTDVKVH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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