当前解析结果
SmilChr06G001773| 统一新 Gene ID | SmilChr06G001773 |
|---|---|
| 名称 | SmilChr06G001773 |
| 描述 | uncharacterized SmilChr06G001773 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 20750155 - 20762052 / - |
| NCBI Gene ID | LOC130987413 |
|---|---|
| GeneID | 130987413 |
| locus_tag | - |
| NCBI Name | LOC130987413 |
| 原始查询 | SmilChr06G001773 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | FAD/NAD(P)-binding oxidoreductase family protein [Source:NCBI gene (formerly Entrezgene);Acc:839050]; symbol=EMB2421; hit=AT1G24340; species=arabidopsis; confidence=high |
| 产物 | FAD/NAD(P)-binding oxidoreductase family protein [Source:NCBI gene (formerly Entrezgene);Acc:839050]; symbol=EMB2421; hit=AT1G24340; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G24340 (EMB2421)FAD/NAD(P)-binding oxidoreductase family protein [Source:NCBI gene (formerly Entrezgene);Acc:839050] identity=63.5; qcov=0.967; evalue=0; confidence=high |
| Rice | Os01g0901700- identity=64.7; qcov=0.405; evalue=4.21e-125; confidence=low |
| GO | GO:0071949 (FAD binding) |
| KEGG | - |
| Pfam | PF01494 (FAD_binding_3); PF21274 (Rng_hyd_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987413 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057766922.1 |
| 2 | Peroxisome | 过氧化物酶体 | 0.20000 | XP_057766922.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057766922.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057766922.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057766922.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:20750340 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C34 |
Chr6:20750404 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B101,B82 |
Chr6:20750529 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A4 |
Chr6:20750530 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B17,B77 |
Chr6:20750653 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C50,C57 |
Chr6:20751151 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | C32 |
Chr6:20751151 |
GA |
G |
1bp_deletion | CDS_variant | 1 | C32 |
Chr6:20751200 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr6:20751303 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A15,B9,C38 |
Chr6:20751455 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A2,A20,B47,C42,D4 |
Chr6:20752001 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B9,C2,C56 |
Chr6:20752804 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B56,B96,C85 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057766922.1PF01494
FAD_binding_3 45-417 aa
PF21274
Rng_hyd_C 632-694 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057766922.1 |
Pfam | PF01494 |
FAD_binding_3 | Domain | 45 | 417 | 3.6e-76 | 257.4 | FAD binding domain |
XP_057766922.1 |
Pfam | PF21274 |
Rng_hyd_C | Domain | 632 | 694 | 9.5e-08 | 33.0 | Aromatic-ring hydroxylase, C-terminal |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。