Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001775`

染色体: Chr06 坐标: 20782763-20788745 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001775`
名称	SmilChr06G001775
描述	sister chromatid cohesion 1 protein 2-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	20782763 - 20788745 / `+`

ID 对照

NCBI Gene ID	`LOC130987406`
GeneID	`130987406`
locus_tag	`-`
NCBI Name	`LOC130987406`
原始查询	`SmilChr06G001775`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	sister chromatid cohesion 1 protein 2-like
产物	sister chromatid cohesion 1 protein 2-like
Arabidopsis	`AT5G40840` (SYN2) Rad21/Rec8-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:834084] identity=49.7; qcov=0.183; evalue=1.02e-36; confidence=weak
Rice	`Os01g0897800` (OsRad21) - identity=45; qcov=0.178; evalue=6.53e-32; confidence=weak
GO	GO:0000795 (synaptonemal complex); GO:0003682 (chromatin binding); GO:0005515 (protein binding); GO:0007064 (mitotic sister chromatid cohesion); GO:0007130 (synaptonemal complex assembly); GO:0008278 (cohesin complex); GO:1990414 (replication-born double-strand break repair via sister chromatid exchange)
KEGG	-
Pfam	PF04824 (Rad21_Rec8); PF04825 (Rad21_Rec8_N)
InterPro	-
eggNOG	-
NR	GeneID:130987406

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057766912.1`
2	Chromosome	染色体	0.80000	`XP_057766912.1`
3	Nucleoplasm	核质	0.60000	`XP_057766912.1`
4	Centromere	着丝粒	0.20000	`XP_057766912.1`
5	Telomere	端粒	0.20000	`XP_057766914.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:20783993`	`GA`	`G`	1bp_deletion	frameshift_variant	12	A16,B108,B111,B12,B45,B49,B95,C20,C32,C43,C68,D9
`Chr6:20784117`	`ACT`	`A`	2bp_deletion	frameshift_variant	1	C52
`Chr6:20784117`	`ACT`	`A`	2bp_deletion	CDS_variant	1	C52
`Chr6:20785228`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B13,B61,B84,C47
`Chr6:20785544`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B113,B65,C49
`Chr6:20785674`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B136
`Chr6:20786062`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B56,B96,C85
`Chr6:20786980`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr6:20787476`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr6:20787559`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr6:20787662`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr6:20787736`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057766912.1

850 aa

425

850

Rad21_Rec8_N

Rad21_Rec8

PF04825 Rad21_Rec8_N 1-89 aa PF04824 Rad21_Rec8 791-845 aa

XP_057766913.1

849 aa

424

849

Rad21_Rec8_N

Rad21_Rec8

PF04825 Rad21_Rec8_N 1-89 aa PF04824 Rad21_Rec8 790-844 aa

XP_057766914.1

848 aa

424

848

Rad21_Rec8_N

Rad21_Rec8

PF04825 Rad21_Rec8_N 1-89 aa PF04824 Rad21_Rec8 789-843 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057766912.1`	Pfam	`PF04825`	Rad21_Rec8_N	Family	1	89	1.5e-27	96.7	N terminus of Rad21 / Rec8 like protein
`XP_057766912.1`	Pfam	`PF04824`	Rad21_Rec8	Family	791	845	6.6e-19	67.7	Conserved region of Rad21 / Rec8 like protein
`XP_057766913.1`	Pfam	`PF04825`	Rad21_Rec8_N	Family	1	89	1.5e-27	96.7	N terminus of Rad21 / Rec8 like protein
`XP_057766913.1`	Pfam	`PF04824`	Rad21_Rec8	Family	790	844	6.6e-19	67.7	Conserved region of Rad21 / Rec8 like protein
`XP_057766914.1`	Pfam	`PF04825`	Rad21_Rec8_N	Family	1	89	1.5e-27	96.7	N terminus of Rad21 / Rec8 like protein
`XP_057766914.1`	Pfam	`PF04824`	Rad21_Rec8	Family	789	843	6.6e-19	67.7	Conserved region of Rad21 / Rec8 like protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057910930.1
ATAAGAAAAGAAATGGGAGAAAATGAATTAAGCAGACAGGAGGGGAGGGGCATAATTGTGAATACGAATTGTGACGACGGTGAGAAAATGCGAAAAAGCTTTAATTTAGTTATTGAAAAAATGAATCTTCCATTGCACACCTCCTTCGAGTAAGAGTCGACCGTTTTTCTTGCCTGAAACACATTTATGAAGCCCAAAGCTTGAGAGCATAGTTGAGTTTAGAGAGAAGATGTTTTACTCGCAGTTGCTGCTGTCGAAGA...

XM_057910929.1
GACAGGAGGGGAGGGGCATAATTGTGAATACGAATTGTGACGACGGTGAGAAAATGCGAAAAAGCTTTAATTTAGTTATTGAAAAAATGAATCTTCCATTGCACACCTCCTTCGAGTAAGAGTCGACCGTTTTTCTTGCCTGAAACACATTTATGAAGCCCAAAGCTTGAGAGCATAGTTGAGTTTAGAGAGAAGATGTTTTACTCGCAGTTGCTGCTGTCGAAGAAGGGCGCGTTGGGCATCATTTGGATGGCCGCTCA...

CDS

3 records

下载 CDS FASTA

LOC130987406
ATGTTTTACTCGCAGTTGCTGCTGTCGAAGAAGGGCGCGTTGGGCATCATTTGGATGGCCGCTCATTGCCACAAACGCCTTAAGAAGAATCAAGTCCAGCAAACCGACATTCCTTCTTCTGTGGATAAGATCATGGATGATGAAGTTCCGGTAGTCACTCATAGAATTTTAGCCTTCCTTCTTCTAGGCATCGTGAGAATTTACTCGAAGAAAGTTGAGTATCTATTTGATGACTGCCATGAAATTCTGAACAGACTATG...

Protein

3 records

下载 Protein FASTA

XP_057766912.1
MFYSQLLLSKKGALGIIWMAAHCHKRLKKNQVQQTDIPSSVDKIMDDEVPVVTHRILAFLLLGIVRIYSKKVEYLFDDCHEILNRLCSVKTRKTARAGIGVSNSQRHYHSITLPKRFELDTFDLGLGLDRDAMGWNVRSREQETRADGRKKDYRRCGSICKAIVPISCTPPRDVFEAYQEQDLLVKPSSNATISLAGVEELRRTRRSLEDCIDLVQLDETENEQMHNKLPNRDWRNCPINEADSDSDSAVRLSNTNRHPS...

XP_057766913.1
MFYSQLLLSKKGALGIIWMAAHCHKRLKKNQVQQTDIPSSVDKIMDDEVPVVTHRILAFLLLGIVRIYSKKVEYLFDDCHEILNRLCSVKTRKTARAGIGVSNSQRHYHSITLPKRFELDTFDLGLGLDRDAMGWNVRSREQETRADGRKKDYRRCGSICKAIVPISCTPPRDVFEAYQEQDLLVKPSSNATISLAGVEELRRTRRSLEDCIDLVQLDETENEQMHNKLPNRDWRNCPINEADSDSDSAVRLSNTNRHPS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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