当前解析结果
SmilChr06G001776| 统一新 Gene ID | SmilChr06G001776 |
|---|---|
| 名称 | SmilChr06G001776 |
| 描述 | uncharacterized SmilChr06G001776 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 20788816 - 20791116 / - |
| NCBI Gene ID | LOC130987432 |
|---|---|
| GeneID | 130987432 |
| locus_tag | - |
| NCBI Name | LOC130987432 |
| 原始查询 | SmilChr06G001776 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Thioredoxin superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831274]; symbol=AT5G14240; hit=AT5G14240; species=arabidopsis; confidence=high |
| 产物 | Thioredoxin superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831274]; symbol=AT5G14240; hit=AT5G14240; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G14240 (AT5G14240)Thioredoxin superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831274] identity=72.9; qcov=0.996; evalue=2.54e-123; confidence=high |
| Rice | Os01g0184800- identity=71.2; qcov=0.968; evalue=1.07e-112; confidence=high |
| GO | GO:0005737 (cytoplasm); GO:0006457 (protein folding) |
| KEGG | - |
| Pfam | PF02114 (Phosducin) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987432 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057766956.1 |
| 2 | Nucleoplasm | 核质 | 1.00000 | XP_057766956.1 |
| 3 | Cytoplasm | 细胞质 | 1.00000 | XP_057766956.1 |
| 4 | Cytosol | 细胞质基质 | 1.00000 | XP_057766956.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057766956.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:20789092 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr6:20789152 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr6:20789173 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A18,B108,B2,B33,C14 |
Chr6:20789871 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B56,B96,C85 |
Chr6:20789903 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A5 |
Chr6:20789907 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A19 |
Chr6:20789917 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B27 |
Chr6:20790830 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B84 |
Chr6:20790846 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A1 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057766956.1PF02114
Phosducin 55-177 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057766956.1 |
Pfam | PF02114 |
Phosducin | Domain | 55 | 177 | 1.5e-15 | 57.6 | Phosducin |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。