Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001787`

染色体: Chr06 坐标: 20911335-20912833 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001787`
名称	SmilChr06G001787
描述	uncharacterized SmilChr06G001787
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	20911335 - 20912833 / `+`

ID 对照

NCBI Gene ID	`LOC130987430`
GeneID	`130987430`
locus_tag	`-`
NCBI Name	`LOC130987430`
原始查询	`SmilChr06G001787`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:822344]; symbol=AT3G27250; hit=AT3G27250; species=arabidopsis; confidence=medium
产物	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:822344]; symbol=AT3G27250; hit=AT3G27250; species=arabidopsis; confidence=medium
Arabidopsis	`AT3G27250` (AT3G27250) uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:822344] identity=39; qcov=1.05; evalue=3.19e-45; confidence=medium
Rice	`Os12g0242500` - identity=28.7; qcov=0.527; evalue=4.04e-07; confidence=low
GO	-
KEGG	-
Pfam	PF25821 (DUF7950)
InterPro	-
eggNOG	-
NR	GeneID:130987430

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057766951.1`
2	Chromosome	染色体	0.00000	`XP_057766951.1`
3	Centromere	着丝粒	0.00000	`XP_057766951.1`
4	Chromatin	染色质	0.00000	`XP_057766951.1`
5	Telomere	端粒	0.00000	`XP_057766951.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:20911721`	`CT`	`C`	1bp_deletion	frameshift_variant	69	A1,A15,A16,A18,A19,A23,A3,A4,A5,B10,B101,B110,B121,B124,B126,B127,B128,B129,B136,B19,B29,B3,B42,B43,B45,B50,B58,B60,B62,B67,B68,B69,B7,B72,B75,B8,B86,B87,B88,B89,B9,B95,C10,C12,C16,C20,C24,C26,C35,C38,C39,C40,C41,C43,C44,C47,C55,C61,C7,C71,C72,C8,C81,C82,C86,C9,D3,D6,D9
`Chr6:20911722`	`T`	`TA`	1bp_insertion	frameshift_variant	4	A15,B72,C16,C24
`Chr6:20911722`	`T`	`TA`	1bp_insertion	CDS_variant	4	A15,B72,C16,C24
`Chr6:20911738`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A16,C26
`Chr6:20911754`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B78
`Chr6:20912012`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,D10
`Chr6:20912118`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:20912148`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B41,B44,B91,C51,C74
`Chr6:20912172`	`CG`	`C`	1bp_deletion	frameshift_variant	5	B41,B44,B91,C51,C74
`Chr6:20912172`	`CG`	`C`	1bp_deletion	CDS_variant	5	B41,B44,B91,C51,C74
`Chr6:20912253`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D3
`Chr6:20912521`	`GGC`	`G`	2bp_deletion	frameshift_variant	5	B56,B82,B96,C35,C72

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057766951.1

294 aa

147

294

DUF7950

PF25821 DUF7950 166-290 aa

XP_057766952.1

258 aa

129

258

DUF7950

PF25821 DUF7950 130-254 aa

XP_057766953.1

258 aa

129

258

DUF7950

PF25821 DUF7950 130-254 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057766951.1`	Pfam	`PF25821`	DUF7950	Domain	166	290	3.4e-45	154.1	Domain of unknown function (DUF7950)
`XP_057766952.1`	Pfam	`PF25821`	DUF7950	Domain	130	254	2.5e-45	154.5	Domain of unknown function (DUF7950)
`XP_057766953.1`	Pfam	`PF25821`	DUF7950	Domain	130	254	2.5e-45	154.5	Domain of unknown function (DUF7950)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057910968.1
AACCAAGTAGTTGTATGAAGTAGATAATGAAGAACTTTAAAGCACACATGCACAAGTTTCAAATCTTCCATAAATGCTTAAAATTTTTCGATTAGATACTGTATCAGAATTATAGATGTACAAAACTCAAATAATCATAATTCAGTCGGATTCAAATTGGATAATCATTCTTAAGCGATCTCAAATATGAATTGGAGTCACAAACTAAACCTGAATTAAGATATAAGTGTAAAGTATTTATAATAATTATAAATTTGAAG...

XM_057910969.1
ATGAAGAACTTTAAAGCACACATGCACAAGTTTCAAATCTTCCATAAATGCTTAAAATTTTTCGATTAGATACTGTATCAGAATTATAGATGTACAAAACTCAAATAATCATAATTCAGTCGGATTCAAATTGGATAATCATTCTTAAGCGATCTCAAATATGAATTGGAGTCACAAACTAAACCTGAATTAAGATATAAGTGTAAAGTATTTATAATAATTATAAATTTGAAGTAGAAATCCATGATAAGTATTATTTT...

CDS

3 records

下载 CDS FASTA

LOC130987430
ATGGGCTGCTGCTGCTCTCTAGTAGCTTTAGCAGGTGCACGTGTCCCCTCATGTATGATCATCAATCAATTCCATGGAGATCTGAGACCTCATCTCCCACTTAAATCCATGGAGAATCATTATTCGGTCATGAACCGACTCATGCTCAGATTCCGGCCTATTGCGCCCAAGCCTGCCGGCGGAGATCCGGACGAGCACGACGGGAGAACCAAATACGAGCGGAGGACTAAGCGGAAGTACGTTAGGGTTCGCGGCCGCCA...

LOC130987430
ATGGAGAATCATTATTCGGTCATGAACCGACTCATGCTCAGATTCCGGCCTATTGCGCCCAAGCCTGCCGGCGGAGATCCGGACGAGCACGACGGGAGAACCAAATACGAGCGGAGGACTAAGCGGAAGTACGTTAGGGTTCGCGGCCGCCAACCTACGAAGATGAAACTTCCGGATCCGGAAAGGCGATCTTCGCCGCCGGGGAGATCAGGAGTCGACGACGGTTCGCCGCCTGTGAGATCGGCGGTGACTCTTCAGCT...

Protein

3 records

下载 Protein FASTA

XP_057766951.1
MGCCCSLVALAGARVPSCMIINQFHGDLRPHLPLKSMENHYSVMNRLMLRFRPIAPKPAGGDPDEHDGRTKYERRTKRKYVRVRGRQPTKMKLPDPERRSSPPGRSGVDDGSPPVRSAVTLQLLPERSESEKSTAAKFRDTVDPEQYRIGDEVSFKSNVAGVTTAGTWIVVERVTDTCVDGGVGLGYSDEEILMNLQADTCPGFVSDGANNVVWVNDACRRMAAAENGALVVRLMVREKLPYFTPSFACRVRMVQQTKQG...

XP_057766952.1
MENHYSVMNRLMLRFRPIAPKPAGGDPDEHDGRTKYERRTKRKYVRVRGRQPTKMKLPDPERRSSPPGRSGVDDGSPPVRSAVTLQLLPERSESEKSTAAKFRDTVDPEQYRIGDEVSFKSNVAGVTTAGTWIVVERVTDTCVDGGVGLGYSDEEILMNLQADTCPGFVSDGANNVVWVNDACRRMAAAENGALVVRLMVREKLPYFTPSFACRVRMVQQTKQGQKWNKIVACDVWRMEFAAGFAWKLDVETALGLGV

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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