当前解析结果
SmilChr06G001797| 统一新 Gene ID | SmilChr06G001797 |
|---|---|
| 名称 | SmilChr06G001797 |
| 描述 | uncharacterized SmilChr06G001797 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 21084870 - 21089103 / + |
| NCBI Gene ID | LOC130990631 |
|---|---|
| GeneID | 130990631 |
| locus_tag | - |
| NCBI Name | LOC130990631 |
| 原始查询 | SmilChr06G001797 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os04g0191000; species=rice; confidence=weak |
| 产物 | hit=Os04g0191000; species=rice; confidence=weak |
| Arabidopsis | AT2G06105 (AT2G06105)aspartyl protease gag-polyprotein [Source:NCBI gene (formerly Entrezgene);Acc:28717693] identity=36.1; qcov=0.063; evalue=7.85e-06; confidence=weak |
| Rice | Os04g0191000- identity=24.1; qcov=0.63; evalue=4.41e-33; confidence=weak |
| GO | GO:0003676 (nucleic acid binding); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00665 (rve); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990631 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057770837.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057770837.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057770837.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057770837.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057770837.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:21084888 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C65,C74 |
Chr6:21084900 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B12 |
Chr6:21085019 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B70,C59 |
Chr6:21085092 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B91,B97 |
Chr6:21085116 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
Chr6:21085138 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B14,B59,B72,B80,C77 |
Chr6:21085185 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B131,B19 |
Chr6:21085197 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B131,B19 |
Chr6:21085254 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B109,C34,C51 |
Chr6:21085258 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
Chr6:21085269 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | B82,C48 |
Chr6:21085269 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B82,C48 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057770837.1PF17919
RT_RNaseH_2 732-824 aa
PF17917
RT_RNaseH 755-855 aa
PF17921
Integrase_H2C2 968-1025 aa
PF00665
rve 1024-1097 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770837.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 732 | 824 | 3e-26 | 92.1 | RNase H-like domain found in reverse transcriptase |
XP_057770837.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 755 | 855 | 7.3e-34 | 116.8 | RNase H-like domain found in reverse transcriptase |
XP_057770837.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 968 | 1025 | 1.9e-11 | 44.6 | Integrase zinc binding domain |
XP_057770837.1 |
Pfam | PF00665 |
rve | Domain | 1024 | 1097 | 6e-09 | 36.8 | Integrase core domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。