当前解析结果
SmilChr06G001824| 统一新 Gene ID | SmilChr06G001824 |
|---|---|
| 名称 | SmilChr06G001824 |
| 描述 | uncharacterized SmilChr06G001824 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 21411938 - 21412468 / - |
| NCBI Gene ID | LOC130990638 |
|---|---|
| GeneID | 130990638 |
| locus_tag | - |
| NCBI Name | LOC130990638 |
| 原始查询 | SmilChr06G001824 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:823922]; symbol=AT3G47680; hit=AT3G47680; species=arabidopsis; confidence=low |
| 产物 | DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:823922]; symbol=AT3G47680; hit=AT3G47680; species=arabidopsis; confidence=low |
| Arabidopsis | AT3G47680 (AT3G47680)DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:823922] identity=32.6; qcov=0.557; evalue=2.59e-11; confidence=low |
| Rice | Os02g0463725- identity=29.3; qcov=0.466; evalue=5.49e-09; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990638 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057770845.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057770845.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057770845.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057770845.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057770845.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:21411939 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C53,D11 |
Chr6:21411940 |
A |
AT |
1bp_insertion | frameshift_variant | 9 | B112,B131,B132,B24,C1,C14,C17,C30,C74 |
Chr6:21411972 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr6:21411975 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C61 |
Chr6:21411985 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B112,B132,C1 |
Chr6:21411987 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A20,B137,B14,C50 |
Chr6:21412013 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | C70 |
Chr6:21412013 |
GA |
G |
1bp_deletion | CDS_variant | 1 | C70 |
Chr6:21412015 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B103,B112,B132,B30,C1 |
Chr6:21412026 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B40,C53 |
Chr6:21412044 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C53,D11 |
Chr6:21412046 |
TC |
T |
1bp_deletion | frameshift_variant | 31 | A10,A11,A16,A20,A24,A4,B110,B114,B118,B128,B13,B133,B137,B14,B16,B2,B30,B51,B57,B59,B66,B73,B77,B89,B96,C36,C50,C52,C72,C83,C84 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。