当前解析结果
SmilChr06G001841| 统一新 Gene ID | SmilChr06G001841 |
|---|---|
| 名称 | SmilChr06G001841 |
| 描述 | protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 21598542 - 21600868 / - |
| NCBI Gene ID | LOC130987480 |
|---|---|
| GeneID | 130987480 |
| locus_tag | - |
| NCBI Name | LOC130987480 |
| 原始查询 | SmilChr06G001841 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic-like |
| 产物 | protein LOW PHOTOSYNTHETIC EFFICIENCY 1%2C chloroplastic-like |
| Arabidopsis | AT3G46610 (AT3G46610)Pentatricopeptide repeat (PPR-like) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:823814] identity=54.1; qcov=0.954; evalue=0; confidence=high |
| Rice | Os12g0283900- identity=56; qcov=0.765; evalue=0; confidence=high |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987480 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057766996.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 0.60000 | XP_057766996.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057766996.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057766996.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057766996.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:21598772 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B112,C7 |
Chr6:21598943 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B50,C2,C32,C68,C86 |
Chr6:21599244 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C13 |
Chr6:21599271 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B98 |
Chr6:21599516 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B95,D7 |
Chr6:21599594 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr6:21599640 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B122,B140,B37,B52 |
Chr6:21599923 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A4,B113,B65,C49 |
Chr6:21600167 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr6:21600228 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B136 |
Chr6:21600497 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C51,C74 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057766996.1PF01535
PPR 212-234 aa
PF13812
PPR_3 247-297 aa
PF13041
PPR_2 249-293 aa
PF13812
PPR_3 273-326 aa
PF12854
PPR_1 280-312 aa
PF13041
PPR_2 284-327 aa
PF01535
PPR 287-317 aa
PF17177
PPR_long 417-572 aa
PF13812
PPR_3 448-496 aa
PF01535
PPR 453-481 aa
PF01535
PPR 495-524 aa
PF13812
PPR_3 514-573 aa
PF01535
PPR 531-558 aa
PF17177
PPR_long 538-702 aa
PF13041
PPR_2 561-605 aa
PF01535
PPR 564-594 aa
PF13812
PPR_3 586-646 aa
PF01535
PPR 600-629 aa
PF13041
PPR_2 631-680 aa
PF01535
PPR 634-663 aa
PF01535
PPR 669-698 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057766996.1 |
Pfam | PF01535 |
PPR | Repeat | 212 | 234 | 1.6e-46 | 154.0 | PPR repeat |
XP_057766996.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 247 | 297 | 2e-51 | 172.6 | Pentatricopeptide repeat domain |
XP_057766996.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 249 | 293 | 5.3e-66 | 219.2 | PPR repeat family |
XP_057766996.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 273 | 326 | 2e-51 | 172.6 | Pentatricopeptide repeat domain |
XP_057766996.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 280 | 312 | 1.8e-29 | 101.9 | PPR repeat |
XP_057766996.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 284 | 327 | 5.3e-66 | 219.2 | PPR repeat family |
XP_057766996.1 |
Pfam | PF01535 |
PPR | Repeat | 287 | 317 | 1.6e-46 | 154.0 | PPR repeat |
XP_057766996.1 |
Pfam | PF17177 |
PPR_long | Repeat | 417 | 572 | 2.9e-29 | 102.7 | Pentacotripeptide-repeat region of PRORP |
XP_057766996.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 448 | 496 | 2e-51 | 172.6 | Pentatricopeptide repeat domain |
XP_057766996.1 |
Pfam | PF01535 |
PPR | Repeat | 453 | 481 | 1.6e-46 | 154.0 | PPR repeat |
XP_057766996.1 |
Pfam | PF01535 |
PPR | Repeat | 495 | 524 | 1.6e-46 | 154.0 | PPR repeat |
XP_057766996.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 514 | 573 | 2e-51 | 172.6 | Pentatricopeptide repeat domain |
XP_057766996.1 |
Pfam | PF01535 |
PPR | Repeat | 531 | 558 | 1.6e-46 | 154.0 | PPR repeat |
XP_057766996.1 |
Pfam | PF17177 |
PPR_long | Repeat | 538 | 702 | 2.9e-29 | 102.7 | Pentacotripeptide-repeat region of PRORP |
XP_057766996.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 561 | 605 | 5.3e-66 | 219.2 | PPR repeat family |
XP_057766996.1 |
Pfam | PF01535 |
PPR | Repeat | 564 | 594 | 1.6e-46 | 154.0 | PPR repeat |
XP_057766996.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 586 | 646 | 2e-51 | 172.6 | Pentatricopeptide repeat domain |
XP_057766996.1 |
Pfam | PF01535 |
PPR | Repeat | 600 | 629 | 1.6e-46 | 154.0 | PPR repeat |
XP_057766996.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 631 | 680 | 5.3e-66 | 219.2 | PPR repeat family |
XP_057766996.1 |
Pfam | PF01535 |
PPR | Repeat | 634 | 663 | 1.6e-46 | 154.0 | PPR repeat |
XP_057766996.1 |
Pfam | PF01535 |
PPR | Repeat | 669 | 698 | 1.6e-46 | 154.0 | PPR repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。