Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001877`

染色体: Chr06 坐标: 22294058-22296917 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001877`
名称	SmilChr06G001877
描述	uncharacterized SmilChr06G001877
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	22294058 - 22296917 / `-`

ID 对照

NCBI Gene ID	`LOC130987519`
GeneID	`130987519`
locus_tag	`-`
NCBI Name	`LOC130987519`
原始查询	`SmilChr06G001877`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821098]; symbol=AT3G01660; hit=AT3G01660; species=arabidopsis; confidence=high
产物	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821098]; symbol=AT3G01660; hit=AT3G01660; species=arabidopsis; confidence=high
Arabidopsis	`AT3G01660` (AT3G01660) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821098] identity=71.5; qcov=0.892; evalue=2.42e-120; confidence=high
Rice	`Os04g0481300` - identity=67; qcov=0.896; evalue=4.22e-115; confidence=high
GO	GO:0008757 (S-adenosylmethionine-dependent methyltransferase activity)
KEGG	-
Pfam	PF01209 (Ubie_methyltran); PF08241 (Methyltransf_11); PF13649 (Methyltransf_25); PF13847 (Methyltransf_31)
InterPro	-
eggNOG	-
NR	GeneID:130987519

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057767040.1`
2	Chloroplast	叶绿体	0.40000	`XP_057767040.1`
3	Mitochondrion intermembrane space	Mitochondrion intermembrane space	0.20000	`XP_057767040.1`
4	Nucleus	细胞核	0.00000	`XP_057767040.1`
5	Chromosome	染色体	0.00000	`XP_057767040.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:22294327`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C48,C82,D4
`Chr6:22294346`	`AC`	`A`	1bp_deletion	frameshift_variant	7	B113,B132,B15,B8,C13,C3,C7
`Chr6:22294357`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B1,B91
`Chr6:22294393`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A2
`Chr6:22294441`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C64
`Chr6:22294446`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C83

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767040.1

260 aa

130

260

Methyltransf_25

Methyltransf_31

Methyltransf_11

Ubie_methyltran

PF13649 Methyltransf_25 120-168 aa PF13847 Methyltransf_31 120-207 aa PF08241 Methyltransf_11 121-172 aa PF01209 Ubie_methyltran 128-175 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767040.1`	Pfam	`PF13649`	Methyltransf_25	Domain	120	168	3.8e-07	31.4	Methyltransferase domain
`XP_057767040.1`	Pfam	`PF13847`	Methyltransf_31	Domain	120	207	8.6e-07	29.6	Methyltransferase domain
`XP_057767040.1`	Pfam	`PF08241`	Methyltransf_11	Domain	121	172	7.1e-11	43.3	Methyltransferase domain
`XP_057767040.1`	Pfam	`PF01209`	Ubie_methyltran	Family	128	175	0.00027	21.1	ubiE/COQ5 methyltransferase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057911057.1
GGTGGGGAGTGGTGTTTATGGCCAAAAACATCTCAATTTTTTTATTTTACTATGGTCTCATATAACTCAAGTTTCTATCATAACAACTTTTAAGCGCAATTCTATCTTCCTATATGAGTTTGTAGACAGTTTGTGTAAAGCCCCACTCTAATGAAAATTGTGATTTCCCTTTATGTTTATAAAATCGTCAATAGTTTTCAATCACAAATTCAAACCAATTTGAACATTTCGTTTGACTAAATTCATTTACACTCCACACT...

CDS

1 records

下载 CDS FASTA

LOC130987519
ATGTATTCTCAAACATACATATCCCCTCCTCTTTCATGGCAGTTTTCAAATCAAAAGAAACCAATCTGGAACACTCTTAATCCGAAGCGCCTGGTCCTGACGCAGGAGGGCAGGACGAAGCTGAACCCCTCTCCCGACAGAGAATTTTACGCGTTCCCGAGATTCGTGACGCACGTGGACGACGGCTTCATATCGAATCTCAGGAATCTGTACGGCGAGATTCTGAGGCCGGAGATGGAGATCCTGGATCTTTGCAGCTC...

Protein

1 records

下载 Protein FASTA

XP_057767040.1
MYSQTYISPPLSWQFSNQKKPIWNTLNPKRLVLTQEGRTKLNPSPDREFYAFPRFVTHVDDGFISNLRNLYGEILRPEMEILDLCSSWVSHLPQQVAYKRVVGHGLNAQELARNPRLDYFFVKDLNKDQKLEMEDCSFDAVLCAVSVQYLQQPEKVFAEVFRVLRPGGVFIVSFSNRLFYEKAIAAWRDGTPYSRVQLVVQYFQCVEGFTHPQIIRKLPYQKQGNSNSFFSRIAAMFGLLSRADPFYALIAYKNFKPIYE

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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