当前解析结果
SmilChr06G001880| 统一新 Gene ID | SmilChr06G001880 |
|---|---|
| 名称 | SmilChr06G001880 |
| 描述 | uncharacterized SmilChr06G001880 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 22409916 - 22412297 / + |
| NCBI Gene ID | LOC130990646 |
|---|---|
| GeneID | 130990646 |
| locus_tag | - |
| NCBI Name | LOC130990646 |
| 原始查询 | SmilChr06G001880 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | GTP-binding 2 [Source:NCBI gene (formerly Entrezgene);Acc:829740]; symbol=GB2; hit=AT4G35860; species=arabidopsis; confidence=medium |
| 产物 | GTP-binding 2 [Source:NCBI gene (formerly Entrezgene);Acc:829740]; symbol=GB2; hit=AT4G35860; species=arabidopsis; confidence=medium |
| Arabidopsis | AT4G35860 (GB2)GTP-binding 2 [Source:NCBI gene (formerly Entrezgene);Acc:829740] identity=96.9; qcov=0.492; evalue=1.4e-41; confidence=medium |
| Rice | Os04g0470100 (OsRab2A1)- identity=92.3; qcov=0.492; evalue=1.33e-40; confidence=medium |
| GO | GO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0005768 (endosome); GO:0030100 (regulation of endocytosis) |
| KEGG | - |
| Pfam | PF00071 (Ras); PF08477 (Roc); PF31029 (Cauli_VI_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990646 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057770855.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057770855.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057770855.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057770855.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057770855.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:22409932 |
A |
ATT |
2bp_insertion | frameshift_variant | 4 | C36,C59,C6,D3 |
Chr6:22409932 |
A |
ATT |
2bp_insertion | CDS_variant | 4 | C36,C59,C6,D3 |
Chr6:22409945 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr6:22409964 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A19,B27 |
Chr6:22409989 |
C |
CTA |
2bp_insertion | frameshift_variant | 15 | A1,A8,A9,B111,B117,B127,B129,B133,B18,B21,B59,C62,C67,C69,C84 |
Chr6:22409990 |
AGG |
A |
2bp_deletion | frameshift_variant | 15 | A1,A8,A9,B111,B117,B127,B129,B133,B18,B21,B59,C62,C67,C69,C84 |
Chr6:22410009 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B29,C78,D11 |
Chr6:22410010 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A4,B66,C30 |
Chr6:22410035 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B100,C19 |
Chr6:22410036 |
C |
T |
EMS_canonical_SNV | stop_gained | 13 | B117,B125,B126,B37,B60,B98,C15,C25,C34,C79,C80,D6,D8 |
Chr6:22410053 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A10,C78 |
Chr6:22410068 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B138 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057770855.1PF31029
Cauli_VI_C 1-63 aa
PF08477
Roc 66-130 aa
PF00071
Ras 66-131 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770855.1 |
Pfam | PF31029 |
Cauli_VI_C | Domain | 1 | 63 | 1e-08 | 35.5 | Caulimoviridae transactivator/viroplasmin C-terminal domain |
XP_057770855.1 |
Pfam | PF08477 |
Roc | Domain | 66 | 130 | 5.9e-15 | 56.3 | Ras of Complex, Roc, domain of DAPkinase |
XP_057770855.1 |
Pfam | PF00071 |
Ras | Domain | 66 | 131 | 8.9e-22 | 78.1 | Ras family |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。