Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr06G001881

染色体: Chr06 坐标: 22411602-22415793 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr06G001881
名称SmilChr06G001881
描述uncharacterized SmilChr06G001881
染色体 / SeqIDChr06 / NC_080392.1
坐标与链方向22411602 - 22415793 / +

ID 对照

NCBI Gene IDLOC130987522
GeneID130987522
locus_tag-
NCBI NameLOC130987522
原始查询SmilChr06G001881

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述Essential protein Yae1, N-terminal [Source:NCBI gene (formerly Entrezgene);Acc:820818]; symbol=AT3G15750; hit=AT3G15750; species=arabidopsis; confidence=medium
产物Essential protein Yae1, N-terminal [Source:NCBI gene (formerly Entrezgene);Acc:820818]; symbol=AT3G15750; hit=AT3G15750; species=arabidopsis; confidence=medium
ArabidopsisAT3G15750 (AT3G15750)
Essential protein Yae1, N-terminal [Source:NCBI gene (formerly Entrezgene);Acc:820818]
identity=41; qcov=0.874; evalue=2.29e-41; confidence=medium
RiceOs01g0950800
-
identity=44.8; qcov=0.674; evalue=4.69e-36; confidence=medium
GO-
KEGG-
PfamPF09811 (Yae1_N)
InterPro-
eggNOG-
NRGeneID:130987522

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057767043.1
2 Cytoplasm 细胞质 1.00000 XP_057767043.1
3 Chromosome 染色体 0.00000 XP_057767043.1
4 Centromere 着丝粒 0.00000 XP_057767043.1
5 Chromatin 染色质 0.00000 XP_057767043.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr6:22413645 G A EMS_canonical_SNV CDS_variant 1 A21
Chr6:22414264 G A EMS_canonical_SNV CDS_variant 1 B12

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057767043.1
215 aa
N
1
108
215
Yae1_N
C
PF09811 Yae1_N 79-116 aa
XP_057767044.1
215 aa
N
1
108
215
Yae1_N
C
PF09811 Yae1_N 79-116 aa
XP_057767045.1
215 aa
N
1
108
215
Yae1_N
C
PF09811 Yae1_N 79-116 aa
XP_057767046.1
215 aa
N
1
108
215
Yae1_N
C
PF09811 Yae1_N 79-116 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057767043.1 Pfam PF09811 Yae1_N Family 79 116 2.2e-10 40.8 Essential protein Yae1, N terminal
XP_057767044.1 Pfam PF09811 Yae1_N Family 79 116 2.2e-10 40.8 Essential protein Yae1, N terminal
XP_057767045.1 Pfam PF09811 Yae1_N Family 79 116 2.2e-10 40.8 Essential protein Yae1, N terminal
XP_057767046.1 Pfam PF09811 Yae1_N Family 79 116 2.2e-10 40.8 Essential protein Yae1, N terminal

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XM_057911061.1
TACATCATCATCGGCGACACAGGTTGCTCAATCCATCATCTGCTTCCGTCTTTCCCCAATTTCATTAAACCCTAGCTCAATTTGGAATTTCATCTTCGCGCTTCGCATCTGTAGTTGTGGGGAAATCGTGTTTGCTTCTGCAGTTCACGGATAAGAGGTTCCAGCCGGTGCATGATCTCGCAATCGGAGTTGAATTCGGTGCTCGGATGGTTACTATCGACGGCCGCCCGATTAAGCTTCAGATTTGGGATACTGTATGC...
XM_057911060.1
TACATCATCATCGGCGACACAGGTTGCTCAATCCATCATCTGCTTCCGTCTTTCCCCAATTTCATTAAACCCTAGCTCAATTTGGAATTTCATCTTCGCGCTTCGCATCTGTAGTTGTGGGGAAATCGTGTTTGCTTCTGCAGTTCACGGATAAGAGGTTCCAGCCGGTGCATGATCTCGCAATCGGAGTTGAATTCGGTGCTCGGATGGTTACTATCGACGGCCGCCCGATTAAGCTTCAGATTTGGGATACTGTATGC...

CDS

4 records

下载 CDS FASTA
LOC130987522
ATGGAGACACATGGGAGTATTGCTAATGATCTCTATTCAAATATCTTGGAATCATCAAGTGTTGATTTAGATAGAAGATCGACTACAATCCAAGTGAATGACAATTTCCATGAAAGTGATCCAGCTGACTTGTGGTATGATGACGACTCTTGTGAAGATTATGTTGAAAAATCGAGTAAAGCACCTGATATGGACAGGGAGTGGCGTAGGAGGCGTGTCCAATTCCACACGTTAGGCTACCGTGATGGTGTCATCGCTGG...
LOC130987522
ATGGAGACACATGGGAGTATTGCTAATGATCTCTATTCAAATATCTTGGAATCATCAAGTGTTGATTTAGATAGAAGATCGACTACAATCCAAGTGAATGACAATTTCCATGAAAGTGATCCAGCTGACTTGTGGTATGATGACGACTCTTGTGAAGATTATGTTGAAAAATCGAGTAAAGCACCTGATATGGACAGGGAGTGGCGTAGGAGGCGTGTCCAATTCCACACGTTAGGCTACCGTGATGGTGTCATCGCTGG...

Protein

4 records

下载 Protein FASTA
XP_057767043.1
METHGSIANDLYSNILESSSVDLDRRSTTIQVNDNFHESDPADLWYDDDSCEDYVEKSSKAPDMDREWRRRRVQFHTLGYRDGVIAGKEAALQEGFNIGFKDSVLTGYNWGLVRGISSAMASLPGTLKEKLVETEETLNKFQQLHESVQCISSTESLKLFYEDQKKKSLKQETAEPSSTETNQSSDAGALENYHVLLQSILHESPLVEGHLKTML
XP_057767044.1
METHGSIANDLYSNILESSSVDLDRRSTTIQVNDNFHESDPADLWYDDDSCEDYVEKSSKAPDMDREWRRRRVQFHTLGYRDGVIAGKEAALQEGFNIGFKDSVLTGYNWGLVRGISSAMASLPGTLKEKLVETEETLNKFQQLHESVQCISSTESLKLFYEDQKKKSLKQETAEPSSTETNQSSDAGALENYHVLLQSILHESPLVEGHLKTML

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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