Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001884`

染色体: Chr06 坐标: 22483537-22505151 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001884`
名称	SmilChr06G001884
描述	zinc finger BED domain-containing protein RICESLEEPER 2-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	22483537 - 22505151 / `+`

ID 对照

NCBI Gene ID	`LOC130990649`
GeneID	`130990649`
locus_tag	`-`
NCBI Name	`LOC130990649`
原始查询	`SmilChr06G001884`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	zinc finger BED domain-containing protein RICESLEEPER 2-like
产物	zinc finger BED domain-containing protein RICESLEEPER 2-like
Arabidopsis	`AT3G42170` (DAYSLEEPER) BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER [Source:NCBI gene (formerly Entrezgene);Acc:3769417] identity=30.8; qcov=0.755; evalue=3.29e-94; confidence=low
Rice	`Os10g0443400` - identity=34.6; qcov=0.775; evalue=2.13e-114; confidence=low
GO	GO:0003677 (DNA binding); GO:0008270 (zinc ion binding); GO:0046983 (protein dimerization activity)
KEGG	-
Pfam	PF05699 (Dimer_Tnp_hAT); PF14372 (hAT-like_RNase-H); PF27039 (ZBED1_RNase-like_helical); PF27041 (ZBED1_RNase-like)
InterPro	-
eggNOG	-
NR	GeneID:130990649

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057770857.1`
2	Cytoplasm	细胞质	0.20000	`XP_057770857.1`
3	Chromosome	染色体	0.00000	`XP_057770857.1`
4	Centromere	着丝粒	0.00000	`XP_057770857.1`
5	Chromatin	染色质	0.00000	`XP_057770857.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:22483544`	`ATG`	`A`	2bp_deletion	frameshift_variant	63	A13,A15,A19,A2,A8,B100,B105,B108,B109,B115,B119,B120,B122,B123,B128,B129,B133,B134,B135,B136,B138,B139,B18,B23,B24,B29,B30,B33,B34,B42,B43,B5,B55,B58,B60,B64,B67,B69,B77,B85,B86,B92,B99,C10,C15,C17,C20,C21,C3,C32,C42,C45,C50,C53,C64,C69,C73,C74,C75,C82,C84,C85,D3
`Chr6:22483548`	`G`	`GGA`	2bp_insertion	frameshift_variant	56	A13,A15,A19,A2,A8,B103,B105,B109,B115,B119,B120,B123,B128,B129,B133,B134,B135,B136,B138,B139,B18,B23,B24,B29,B30,B33,B34,B40,B42,B43,B5,B55,B58,B60,B64,B69,B85,B86,B99,C10,C15,C20,C3,C32,C42,C45,C50,C53,C64,C69,C73,C74,C75,C82,C84,C85
`Chr6:22483557`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B118,B20,C59,C78
`Chr6:22483907`	`CT`	`C`	1bp_deletion	frameshift_variant	58	A1,A10,A3,A5,B102,B103,B111,B118,B128,B132,B135,B18,B19,B23,B27,B32,B33,B35,B36,B40,B42,B45,B48,B50,B52,B54,B55,B61,B83,B89,B9,B93,B98,C1,C17,C19,C28,C34,C38,C39,C4,C40,C49,C56,C58,C6,C60,C69,C72,C75,C77,C78,C79,C81,C83,C84,D5,D7
`Chr6:22483936`	`C`	`T`	EMS_canonical_SNV	stop_gained	61	A24,A8,A9,B105,B106,B11,B123,B126,B131,B134,B138,B16,B17,B22,B28,B29,B40,B46,B47,B48,B52,B56,B65,B69,B70,B74,B78,B79,B9,B92,B96,B97,C1,C10,C13,C15,C21,C22,C23,C24,C31,C36,C4,C41,C43,C47,C48,C49,C5,C50,C55,C57,C60,C62,C65,C75,C80,C87,C9,D8,D9
`Chr6:22483950`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C29
`Chr6:22483958`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:22483966`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr6:22484016`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C56,C65
`Chr6:22484063`	`G`	`A`	EMS_canonical_SNV	stop_gained	24	A25,A8,B115,B127,B2,B22,B41,B47,B53,B55,B60,B66,B84,C10,C24,C40,C43,C64,C66,C69,C80,C84,D6,D8
`Chr6:22484079`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B103,C25,C34
`Chr6:22484090`	`CA`	`C`	1bp_deletion	frameshift_variant	3	A14,A24,B46

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770857.1

857 aa

428

857

ZBED1_RNase-like

ZBED1_RNase-like_helical

hAT-like_RNase-H

Dimer_Tnp_hAT

PF27041 ZBED1_RNase-like 296-391 aa PF27039 ZBED1_RNase-like_helical 395-504 aa PF14372 hAT-like_RNase-H 524-621 aa PF05699 Dimer_Tnp_hAT 683-766 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770857.1`	Pfam	`PF27041`	ZBED1_RNase-like	Domain	296	391	4.6e-32	110.8	ZBED1 RNase-like domain
`XP_057770857.1`	Pfam	`PF27039`	ZBED1_RNase-like_helical	Domain	395	504	9.4e-37	126.2	ZBED1 RNase-like helical domain
`XP_057770857.1`	Pfam	`PF14372`	hAT-like_RNase-H	Domain	524	621	1.4e-20	74.1	hAT-like transposase, RNase-H fold
`XP_057770857.1`	Pfam	`PF05699`	Dimer_Tnp_hAT	Domain	683	766	8.4e-29	99.9	hAT family C-terminal dimerisation region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057914874.1
ATGGTTGATGCGGCCGAAATCATGTTGAACCTCTCTGAGGGATCTGCTTCTTCGTCGAAAGACGGGAAGAAGAAGCAGAAAGGTCCAAAGAGCAAAGGCAACAAGGAAGCAAGTGGGAGTGGTAAAGTGGGCGGCCCTACTGGTGGCGTAAAGAAGCTAAAAGGAAAGGGAAAGTGCTTCAAGTGCGGAAAGATTGGGCACTGGAAGGTGAATTGTCTGGTGCTCAAGGCAAAAGGACAAGGTCTTTATTTTCAAACGTC...

CDS

1 records

下载 CDS FASTA

LOC130990649
ATGGTTGATGCGGCCGAAATCATGTTGAACCTCTCTGAGGGATCTGCTTCTTCGTCGAAAGACGGGAAGAAGAAGCAGAAAGGTCCAAAGAGCAAAGGCAACAAGGAAGCAAGTGGGAGTGGTAAAGTGGGCGGCCCTACTGGTGGCGTAAAGAAGCTAAAAGGAAAGGGAAAGTGCTTCAAGTGCGGAAAGATTGGGCACTGGAAGGTGAATTGTCTGGTGCTCAAGGCAAAAGGACAAGGTCTTTATTTTCAAACGTC...

Protein

1 records

下载 Protein FASTA

XP_057770857.1
MVDAAEIMLNLSEGSASSSKDGKKKQKGPKSKGNKEASGSGKVGGPTGGVKKLKGKGKCFKCGKIGHWKVNCLVLKAKGQGLYFQTSLQESTLIPAPLQNRSDGKAADIHVNQLDPNHEVETEIREENQDNPYMTKKRKRTSKVWDDFKEITDVKGNVKAECIHCKTRLSVNKTGCTTHLARHSAKCTAKQIHSTKGQQNISITMSMAQKEAVSSVTNFKYDHSKIREVLSHMIIVHELPFRFPEYELFNLLMKSATPLY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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