当前解析结果
SmilChr06G001891| 统一新 Gene ID | SmilChr06G001891 |
|---|---|
| 名称 | SmilChr06G001891 |
| 描述 | probable methyltransferase PMT9 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 22581437 - 22585467 / + |
| NCBI Gene ID | LOC130987529 |
|---|---|
| GeneID | 130987529 |
| locus_tag | - |
| NCBI Name | LOC130987529 |
| 原始查询 | SmilChr06G001891 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable methyltransferase PMT9 |
| 产物 | probable methyltransferase PMT9 |
| Arabidopsis | AT5G14430 (AT5G14430)S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831294] identity=69.4; qcov=0.987; evalue=0; confidence=high |
| Rice | Os06g0687450- identity=66.8; qcov=0.949; evalue=0; confidence=high |
| GO | GO:0005737 (cytoplasm); GO:0005768 (endosome); GO:0005802 (trans-Golgi network); GO:0008168 (methyltransferase activity) |
| KEGG | - |
| Pfam | PF03141 (Methyltransf_29); PF08241 (Methyltransf_11); PF13649 (Methyltransf_25) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987529 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057767056.1 |
| 2 | Golgi stack | 高尔基堆 | 0.20000 | XP_057767056.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057767056.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057767056.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057767056.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:22582052 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B136 |
Chr6:22582177 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B90,B92 |
Chr6:22582870 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B21,B24,B98 |
Chr6:22583167 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B90,B92 |
Chr6:22583366 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B10,C48 |
Chr6:22583403 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
Chr6:22583500 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C22 |
Chr6:22583543 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A2,B80,C42 |
Chr6:22583572 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B132,C1 |
Chr6:22584845 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B112,B114,B123,D3 |
Chr6:22584860 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C23 |
Chr6:22584881 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B12,B137,B16,B55 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057767056.1PF03141
Methyltransf_29 91-603 aa
PF13649
Methyltransf_25 217-309 aa
PF08241
Methyltransf_11 218-312 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057767056.1 |
Pfam | PF03141 |
Methyltransf_29 | Family | 91 | 603 | 3.1e-224 | 746.0 | Putative S-adenosyl-L-methionine-dependent methyltransferase |
XP_057767056.1 |
Pfam | PF13649 |
Methyltransf_25 | Domain | 217 | 309 | 1.7e-07 | 32.6 | Methyltransferase domain |
XP_057767056.1 |
Pfam | PF08241 |
Methyltransf_11 | Domain | 218 | 312 | 2.2e-09 | 38.5 | Methyltransferase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。