当前解析结果
SmilChr06G001901| 统一新 Gene ID | SmilChr06G001901 |
|---|---|
| 名称 | SmilChr06G001901 |
| 描述 | uncharacterized SmilChr06G001901 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 22793917 - 22799973 / - |
| NCBI Gene ID | LOC130987536 |
|---|---|
| GeneID | 130987536 |
| locus_tag | - |
| NCBI Name | LOC130987536 |
| 原始查询 | SmilChr06G001901 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Pseudouridine synthase family protein [Source:NCBI gene (formerly Entrezgene);Acc:831297]; symbol=AT5G14460; hit=AT5G14460; species=arabidopsis; confidence=high |
| 产物 | Pseudouridine synthase family protein [Source:NCBI gene (formerly Entrezgene);Acc:831297]; symbol=AT5G14460; hit=AT5G14460; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G14460 (AT5G14460)Pseudouridine synthase family protein [Source:NCBI gene (formerly Entrezgene);Acc:831297] identity=63.3; qcov=1.05; evalue=0; confidence=high |
| Rice | Os05g0108000- identity=68.3; qcov=0.767; evalue=0; confidence=high |
| GO | GO:0003723 (RNA binding); GO:0005739 (mitochondrion); GO:0006400 (tRNA modification); GO:0009982 (pseudouridine synthase activity); GO:1990481 (mRNA pseudouridine synthesis) |
| KEGG | - |
| Pfam | PF01509 (TruB_N); PF16198 (TruB_C_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987536 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057767073.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 0.80000 | XP_057767073.1 |
| 3 | Mitochondrion | 线粒体 | 0.20000 | XP_057767073.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057767073.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057767073.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:22794041 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B131 |
Chr6:22794041 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B131 |
Chr6:22796486 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A1,B90,B92 |
Chr6:22797496 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B66,B98 |
Chr6:22797776 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr6:22799631 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C51,C74 |
Chr6:22799719 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C77,D4 |
Chr6:22799883 |
TA |
T |
1bp_deletion | frameshift_variant | 2 | C77,D4 |
Chr6:22799883 |
TA |
T |
1bp_deletion | CDS_variant | 2 | C77,D4 |
Chr6:22799908 |
ATC |
A |
2bp_deletion | frameshift_variant | 88 | A1,A11,A18,A20,A21,A9,B10,B100,B102,B103,B106,B114,B118,B122,B123,B125,B126,B14,B140,B15,B16,B17,B19,B2,B20,B21,B23,B24,B27,B28,B30,B35,B37,B4,B40,B45,B46,B47,B50,B51,B53,B57,B58,B59,B62,B64,B66,B67,B70,B72,B74,B76,B77,B80,B84,B85,B90,B92,B94,B98,C12,C13,C2,C22,C33,C35,C41,C44,C46,C48,C5,C58,C59,C60,C63,C64,C66,C68,C71,C80,C81,C82,C87,D10,D11,D3,D7,D8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057767073.1PF01509
TruB_N 317-467 aa
PF16198
TruB_C_2 468-509 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057767073.1 |
Pfam | PF01509 |
TruB_N | Domain | 317 | 467 | 3.9e-53 | 180.5 | TruB family pseudouridylate synthase (N terminal domain) |
XP_057767073.1 |
Pfam | PF16198 |
TruB_C_2 | Family | 468 | 509 | 1.2e-08 | 35.7 | tRNA pseudouridylate synthase B C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。