Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001902`

染色体: Chr06 坐标: 22825836-22828673 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001902`
名称	SmilChr06G001902
描述	uncharacterized SmilChr06G001902
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	22825836 - 22828673 / `+`

ID 对照

NCBI Gene ID	`LOC130987537`
GeneID	`130987537`
locus_tag	`-`
NCBI Name	`LOC130987537`
原始查询	`SmilChr06G001902`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	beta-1,4-N-acetylglucosaminyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:822376]; symbol=AT3G27540; hit=AT3G27540; species=arabidopsis; confidence=high
产物	beta-1,4-N-acetylglucosaminyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:822376]; symbol=AT3G27540; hit=AT3G27540; species=arabidopsis; confidence=high
Arabidopsis	`AT3G27540` (AT3G27540) beta-1,4-N-acetylglucosaminyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:822376] identity=77; qcov=0.994; evalue=0; confidence=high
Rice	`Os02g0594900` - identity=71.5; qcov=1; evalue=0; confidence=high
GO	GO:0003830 (beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity); GO:0006044 (N-acetylglucosamine metabolic process); GO:0006487 (protein N-linked glycosylation); GO:0016020 (membrane)
KEGG	smil00510 (N-Glycan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF04724 (Glyco_transf_17)
InterPro	-
eggNOG	-
NR	GeneID:130987537

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057767074.1`
2	Golgi stack	高尔基堆	0.20000	`XP_057767074.1`
3	Nucleus	细胞核	0.00000	`XP_057767074.1`
4	Chromosome	染色体	0.00000	`XP_057767074.1`
5	Centromere	着丝粒	0.00000	`XP_057767074.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:22827214`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A20
`Chr6:22827279`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B1,B104,B90,B92
`Chr6:22827361`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D3
`Chr6:22827444`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A4,B93,C17,D10,D5
`Chr6:22827594`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr6:22827648`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B1,B90,B92
`Chr6:22827738`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B12,B137,B16,B55,C2
`Chr6:22827748`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B21,B24,B98

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767074.1

358 aa

179

358

Glyco_transf_17

PF04724 Glyco_transf_17 13-356 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767074.1`	Pfam	`PF04724`	Glyco_transf_17	Family	13	356	1.1e-179	597.6	Glycosyltransferase family 17

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057911091.1
AAATTTACGAGAAAAGTAAAAATAAAATTAAAATAGGCATGCAGTCTCCACCTTACACTTTCTTCCCTTTCTTCTTCGCAATCACTACAATTTTCCAATCCGATTTTCCATTTCTGATTTTTTTCCCCAATCGTTAAATATAGTATTAATCCCAAATGCCATTTTCTCCCAAATAATTGCTCATTTTTTCAGCCTCCCATTCACTCTCTGCGCGTCAAGAAAATTTGCGAAAAAGATTTCTTTTTTTATGAGAGAGAAAG...

CDS

1 records

下载 CDS FASTA

LOC130987537
ATGTCGAAAGTCCGGTGGTCGTTTCTAGGGCTAGATTTGAGGGCACTGCTCTTCCTTTGCCTCGTTATTCCCTCAGGCATAGTCGGGATATACCTCCACGGCCAAAAGATCACCTATTTCCTCCGGCCGTTGTGGGAGTCGCCTCCGAAGCCATTCATAACCCTAACTCACTACTACCACGAGAATGTCTCGATGGAGACCCTCTGCAGGCTTCACGGGTGGGGGATCCGTGACTTCCCTAGGCGCGTCTATGATGCTGT...

Protein

1 records

下载 Protein FASTA

XP_057767074.1
MSKVRWSFLGLDLRALLFLCLVIPSGIVGIYLHGQKITYFLRPLWESPPKPFITLTHYYHENVSMETLCRLHGWGIRDFPRRVYDAVLFSNEVDMLKIRWKEMYPYISQFVLLEANSTFTALPKPLNFALNRDKFKFVEPRLTYGTIGGRFKKGENPFIEEAYQRLALDQLLRIAGIEDDDLLVMSDVDEIPSQHTINLLRWCDDIPPVLHLQLKNYLYSFEFLYDLRSWRASVHRYQRGKTRYAHYRQTDYLLADSGWH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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