Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001916`

染色体: Chr06 坐标: 23163249-23170292 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001916`
名称	SmilChr06G001916
描述	nuclear pore complex protein GP210
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	23163249 - 23170292 / `-`

ID 对照

NCBI Gene ID	`LOC130990078`
GeneID	`130990078`
locus_tag	`-`
NCBI Name	`LOC130990078`
原始查询	`SmilChr06G001916`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	nuclear pore complex protein GP210
产物	nuclear pore complex protein GP210
Arabidopsis	`AT5G40480` (EMB3012) embryo defective 3012 [Source:NCBI gene (formerly Entrezgene);Acc:834046] identity=51.4; qcov=1; evalue=0; confidence=high
Rice	`Os09g0565500` - identity=41.6; qcov=0.336; evalue=7.76e-131; confidence=low
GO	-
KEGG	smil03013 (Nucleocytoplasmic transport - Salvia miltiorrhiza (redroot sage))
Pfam	PF02368 (Big_2); PF22962 (Ig_NUP210_7th); PF22963 (Ig_NUP210_3rd); PF22967 (Ig_NUP210_1st); PF22969 (Ig_NUP210_2nd); PF24425 (Ig_GP210_15th); PF24427 (Ig_GP210_16th); PF26182 (Ig_NUP210_5th)
InterPro	-
eggNOG	-
NR	GeneID:130990078

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	0.80000	`XP_057770260.1`
2	Trans-golgi network	Trans-golgi network	0.40000	`XP_057770260.1`
3	Nucleus membrane	核膜	0.20000	`XP_057770260.1`
4	Endoplasmic reticulum	内质网	0.20000	`XP_057770260.1`
5	Endoplasmic reticulum membrane	内质网膜	0.20000	`XP_057770260.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:23163446`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B50,C2,C32,C68
`Chr6:23163473`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr6:23163493`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr6:23163542`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A21
`Chr6:23163546`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B112,B132,C1
`Chr6:23163808`	`TA`	`T`	1bp_deletion	frameshift_variant	1	B124
`Chr6:23163808`	`TA`	`T`	1bp_deletion	CDS_variant	1	B124
`Chr6:23164002`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B95
`Chr6:23164127`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr6:23164154`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr6:23164326`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A20,B10,B51,C48
`Chr6:23164385`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,B140

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770260.1

1936 aa

968

1936

Ig_NUP210_1st

Ig_NUP210_2nd

Ig_NUP210_3rd

Ig_NUP210_5th

Big_2

Ig_NUP210_7th

Ig_GP210_15th

Ig_GP210_16th

PF22967 Ig_NUP210_1st 35-118 aa PF22969 Ig_NUP210_2nd 138-235 aa PF22963 Ig_NUP210_3rd 247-322 aa PF26182 Ig_NUP210_5th 477-550 aa PF02368 Big_2 493-536 aa PF22962 Ig_NUP210_7th 714-810 aa PF24425 Ig_GP210_15th 1624-1738 aa PF24427 Ig_GP210_16th 1750-1829 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770260.1`	Pfam	`PF22967`	Ig_NUP210_1st	Domain	35	118	1.7e-20	73.7	NUP210 Ig-like domain 1
`XP_057770260.1`	Pfam	`PF22969`	Ig_NUP210_2nd	Domain	138	235	1.8e-09	38.1	NUP210 Ig-like domain 2
`XP_057770260.1`	Pfam	`PF22963`	Ig_NUP210_3rd	Domain	247	322	1.6e-07	32.3	NUP210 Ig-like domain 3
`XP_057770260.1`	Pfam	`PF26182`	Ig_NUP210_5th	Domain	477	550	1.2e-14	54.6	NUP210 Ig-like domain 5
`XP_057770260.1`	Pfam	`PF02368`	Big_2	Domain	493	536	6.5e-21	74.8	Bacterial Ig-like domain (group 2)
`XP_057770260.1`	Pfam	`PF22962`	Ig_NUP210_7th	Domain	714	810	1.6e-16	61.1	NUP210 Ig-like domain 7
`XP_057770260.1`	Pfam	`PF24425`	Ig_GP210_15th	Domain	1624	1738	2.2e-43	147.7	Nuclear pore complex protein GP210, Ig-like domain
`XP_057770260.1`	Pfam	`PF24427`	Ig_GP210_16th	Domain	1750	1829	1.7e-25	89.7	Nuclear pore complex protein GP210, Ig-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057914277.1
ACCCAACACCACGTAGCCCACGTCCCGCCCATCTCCCCCCCAAAAAACCCTGCGCCAAAACCCTAAATTCTTGGTGTCACCAAATTTCCAACGAATAATTCCAAAATTTATTTCCCCCCTCAACATTTCCCTTATTCAAAACTTCATCACTCCAGTTAATGTTGAATGCTTCTTCATTCTGCCCAATTTTCACCTGAGAAAACCGAAAAATGCTTCCCTCCCCTCCGTTTCTACTTTCTCCCTTCCTCCTCCTCCTCCTC...

CDS

1 records

下载 CDS FASTA

LOC130990078
ATGCTTCCCTCCCCTCCGTTTCTACTTTCTCCCTTCCTCCTCCTCCTCCTCTTTCTCCACCATGCGACGTCGTTCTCGACTTCTGGCCCCCACATTACCGACGTCAACATACTCCTGCCGCCCAAAATGACCCACCCCGTCGAGTACAGGCTTCAGGCCAGCGACGGTTGCTTCAAATGGTCGTGGGATCATCACGACATACTGTCGGTGTTGCCGGAGTTCAATGCGAGCAGCCGCTGCTCGACGAGTGCTCGGTTGAG...

Protein

1 records

下载 Protein FASTA

XP_057770260.1
MLPSPPFLLSPFLLLLLFLHHATSFSTSGPHITDVNILLPPKMTHPVEYRLQASDGCFKWSWDHHDILSVLPEFNASSRCSTSARLRSIAPYGGRKETAVYATDLNSGMVIRCKVYVDAISKIKIFHNSVKLDLDGLATLRVRAFDAEDNVFSSLVGLQFMWQLMPETHGLPHSLVHVPLKESPLSDCSGFCGDLDIQVNLEESGVFSDFYVVKGTEIGHEIVSVSLLEPSFGHLADNIVLTVAEAMSLDPPSPVHVLIG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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