当前解析结果
SmilChr06G001920| 统一新 Gene ID | SmilChr06G001920 |
|---|---|
| 名称 | SmilChr06G001920 |
| 描述 | ABC transporter B family member 26, chloroplastic-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 23204893 - 23211500 / - |
| NCBI Gene ID | LOC130988949 |
|---|---|
| GeneID | 130988949 |
| locus_tag | - |
| NCBI Name | LOC130988949 |
| 原始查询 | SmilChr06G001920 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ABC transporter B family member 26, chloroplastic-like |
| 产物 | ABC transporter B family member 26%2C chloroplastic-like |
| Arabidopsis | AT1G70610 (ABCB26)transporter associated with antigen processing protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:843398] identity=55; qcov=0.918; evalue=0; confidence=high |
| Rice | Os01g0911300 (OsABCB24)- identity=53.6; qcov=0.528; evalue=1.4e-135; confidence=medium |
| GO | GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0055085 (transmembrane transport); GO:0140359 (ABC-type transporter activity) |
| KEGG | - |
| Pfam | PF00005 (ABC_tran); PF00664 (ABC_membrane) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988949 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057768925.1 |
| 2 | Chloroplast membrane | 叶绿体膜 | 1.00000 | XP_057768925.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057768925.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057768925.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057768925.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:23205570 |
GTC |
G |
2bp_deletion | frameshift_variant | 42 | A10,A16,A23,A8,B112,B135,B2,B25,B26,B27,B31,B33,B35,B38,B39,B40,B44,B51,B56,B61,B76,B78,B96,C1,C20,C21,C23,C26,C31,C37,C4,C40,C43,C57,C6,C62,C73,C78,C79,C85,D11,D9 |
Chr6:23206249 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr6:23210515 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | B49 |
Chr6:23210515 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057768925.1PF00664
ABC_membrane 171-401 aa
PF00005
ABC_tran 471-620 aa
XP_057768926.1PF00664
ABC_membrane 171-401 aa
PF00005
ABC_tran 468-601 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057768925.1 |
Pfam | PF00664 |
ABC_membrane | Family | 171 | 401 | 8.7e-39 | 134.6 | ABC transporter transmembrane region |
XP_057768925.1 |
Pfam | PF00005 |
ABC_tran | Domain | 471 | 620 | 1.1e-32 | 114.3 | ABC transporter |
XP_057768926.1 |
Pfam | PF00664 |
ABC_membrane | Family | 171 | 401 | 8.3e-39 | 134.6 | ABC transporter transmembrane region |
XP_057768926.1 |
Pfam | PF00005 |
ABC_tran | Domain | 468 | 601 | 3.3e-26 | 93.2 | ABC transporter |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。