Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001932`

染色体: Chr06 坐标: 23537302-23541553 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001932`
名称	SmilChr06G001932
描述	probable prolyl 4-hydroxylase 9
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	23537302 - 23541553 / `+`

ID 对照

NCBI Gene ID	`LOC130988912`
GeneID	`130988912`
locus_tag	`-`
NCBI Name	`LOC130988912`
原始查询	`SmilChr06G001932`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable prolyl 4-hydroxylase 9
产物	probable prolyl 4-hydroxylase 9
Arabidopsis	`AT4G33910` (AT4G33910) 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829535] identity=67.6; qcov=0.959; evalue=2.08e-144; confidence=high
Rice	`Os03g0761900` - identity=68; qcov=0.949; evalue=1.87e-138; confidence=high
GO	GO:0004656 (procollagen-proline 4-dioxygenase activity); GO:0005506 (iron ion binding); GO:0005783 (endoplasmic reticulum); GO:0018401 (peptidyl-proline hydroxylation to 4-hydroxy-L-proline); GO:0031418 (L-ascorbic acid binding)
KEGG	smil00330 (Arginine and proline metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF03171 (2OG-FeII_Oxy); PF13640 (2OG-FeII_Oxy_3)
InterPro	-
eggNOG	-
NR	GeneID:130988912

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057768880.1`
2	Nucleus	细胞核	0.00000	`XP_057768880.1`
3	Chromosome	染色体	0.00000	`XP_057768880.1`
4	Centromere	着丝粒	0.00000	`XP_057768880.1`
5	Chromatin	染色质	0.00000	`XP_057768880.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:23537542`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B4,B86,D8
`Chr6:23537619`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B4,B86,D8
`Chr6:23537824`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C4,C47
`Chr6:23537881`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A13,B132,B138,B56,B76
`Chr6:23538690`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr6:23538992`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B129,B32,C86,D11
`Chr6:23540827`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B122,B140,B37,D2
`Chr6:23540857`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A10,B112,B132,C1

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768880.1

296 aa

148

296

2OG-FeII_Oxy_3

PF13640 2OG-FeII_Oxy_3 172-254 aa

XP_057768881.1

293 aa

146

293

2OG-FeII_Oxy

2OG-FeII_Oxy_3

PF03171 2OG-FeII_Oxy 169-285 aa PF13640 2OG-FeII_Oxy_3 172-285 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768880.1`	Pfam	`PF13640`	2OG-FeII_Oxy_3	Domain	172	254	2.2e-09	38.8	2OG-Fe(II) oxygenase superfamily
`XP_057768881.1`	Pfam	`PF03171`	2OG-FeII_Oxy	Domain	169	285	4.6e-06	27.6	2OG-Fe(II) oxygenase superfamily
`XP_057768881.1`	Pfam	`PF13640`	2OG-FeII_Oxy_3	Domain	172	285	3.8e-16	60.5	2OG-Fe(II) oxygenase superfamily

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057912897.1
AACATGAAGTACTAGTATGAAGTTTTGATTATTACTAGCAAGGAAGGAGACGCCTTCAACGGCAGATAAAAACAATTCCCGCCGCGCCACCACACTCTCAAACCGTAATCTCCCGGCCAGTTTTGCCACCAACACACCGCAATTCCGCTGCAAAATCTGCTCAATTGAGCTTCAAGAGCTATCGTTTCCCTCCGATCGCGCTTTAGAATCGGCGGTGGCGGAGAATGAAGATCAAAGGAAGTAAAGTCGCCGGAGGAAGC...

XM_057912898.1
ACATGAAGTACTAGTATGAAGTTTTGATTATTACTAGCAAGGAAGGAGACGCCTTCAACGGCAGATAAAAACAATTCCCGCCGCGCCACCACACTCTCAAACCGTAATCTCCCGGCCAGTTTTGCCACCAACACACCGCAATTCCGCTGCAAAATCTGCTCAATTGAGCTTCAAGAGCTATCGTTTCCCTCCGATCGCGCTTTAGAATCGGCGGTGGCGGAGAATGAAGATCAAAGGAAGTAAAGTCGCCGGAGGAAGCT...

CDS

2 records

下载 CDS FASTA

LOC130988912
ATGAAGATCAAAGGAAGTAAAGTCGCCGGAGGAAGCTGGACTACCCTAGGCCTGCCCTTAATTTTCCTGTTGTGCCTCTTCTTCTTCCTCGCCGGTTTCTTCGGCGCATCTCTTTTCTCCCAGCAGGAGAGTCCTACTGGTAATTTGCGGCCGCGGACGAGGGAATTGGTGGAGGAGATGATAGAACTGAAGGGGTTGCCACATGGAGATTCCGGCAGGGAGTCTGTGGAGACGATCCCCTTTCAGATTCTGAGCTGGAA...

Protein

2 records

下载 Protein FASTA

XP_057768880.1
MKIKGSKVAGGSWTTLGLPLIFLLCLFFFLAGFFGASLFSQQESPTGNLRPRTRELVEEMIELKGLPHGDSGRESVETIPFQILSWKPRALYFPNFATAEQCQSIVKMAKVNLRPSTLALRQGETADNTKGIRTSSGMFISAYEDKTGTLDQIEEKIARATMIPRKHGESFNVLRYEIGQRYQSHYDAFNPAEYGPQKSQRVASFLLYLSDVEEGGETMFPLENGKNIDSNYDFGKCLGLKVKPQRGDGLLFYSLFPNGT...

XP_057768881.1
MKIKGSKVAGGSWTTLGLPLIFLLCLFFFLAGFFGASLFSQQESPTGNLRPRTRELVEEMIELKGLPHGDSGRESVETIPFQILSWKPRALYFPNFATAEQCQSIVKMAKVNLRPSTLALRQGETADNTKGIRTSSGMFISAYEDKTGTLDQIEEKIARATMIPRKHGESFNVLRYEIGQRYQSHYDAFNPAEYGPQKSQRVASFLLYLSDVEEGGETMFPLENGKNIDSNYDFGKCLGLKVKPQRGDGLLFYSLFPNGT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器