Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G002028`

染色体: Chr06 坐标: 26387812-26395588 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G002028`
名称	SmilChr06G002028
描述	filament-like plant protein 7
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	26387812 - 26395588 / `+`

ID 对照

NCBI Gene ID	`LOC130987548`
GeneID	`130987548`
locus_tag	`-`
NCBI Name	`LOC130987548`
原始查询	`SmilChr06G002028`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	filament-like plant protein 7
产物	filament-like plant protein 7
Arabidopsis	`AT2G23360` (AT2G23360) filament-like protein (DUF869) [Source:NCBI gene (formerly Entrezgene);Acc:816868] identity=40.7; qcov=0.726; evalue=3e-138; confidence=medium
Rice	`Os03g0246500` - identity=37.2; qcov=0.428; evalue=1.06e-63; confidence=low
GO	-
KEGG	-
Pfam	PF05911 (FPP)
InterPro	-
eggNOG	-
NR	GeneID:130987548

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057767089.1`
2	Nucleus	细胞核	0.20000	`XP_057767089.1`
3	Nucleus membrane	核膜	0.20000	`XP_057767089.1`
4	Chromosome	染色体	0.00000	`XP_057767089.1`
5	Centromere	着丝粒	0.00000	`XP_057767089.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:26392094`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B129,B90,C17
`Chr6:26392143`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C43
`Chr6:26392663`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B40,B76
`Chr6:26392860`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B12
`Chr6:26392936`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B114,B65,C49
`Chr6:26392956`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B27,B57
`Chr6:26393029`	`TCG`	`T`	2bp_deletion	frameshift_variant	1	B36
`Chr6:26393029`	`TCG`	`T`	2bp_deletion	CDS_variant	1	B36
`Chr6:26393031`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B114,B65,C49
`Chr6:26393171`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr6:26393300`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B114,B65,C49
`Chr6:26394139`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B80

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767089.1

934 aa

467

934

FPP

PF05911 FPP 1-649 aa PF05911 FPP 689-812 aa

XP_057767090.1

934 aa

467

934

FPP

PF05911 FPP 1-649 aa PF05911 FPP 689-812 aa

XP_057767091.1

934 aa

467

934

FPP

PF05911 FPP 1-649 aa PF05911 FPP 689-812 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767089.1`	Pfam	`PF05911`	FPP	Coiled-coil	1	649	1.4e-184	616.6	Filament-like plant protein, long coiled-coil
`XP_057767089.1`	Pfam	`PF05911`	FPP	Coiled-coil	689	812	1.4e-184	616.6	Filament-like plant protein, long coiled-coil
`XP_057767090.1`	Pfam	`PF05911`	FPP	Coiled-coil	1	649	1.4e-184	616.6	Filament-like plant protein, long coiled-coil
`XP_057767090.1`	Pfam	`PF05911`	FPP	Coiled-coil	689	812	1.4e-184	616.6	Filament-like plant protein, long coiled-coil
`XP_057767091.1`	Pfam	`PF05911`	FPP	Coiled-coil	1	649	1.4e-184	616.6	Filament-like plant protein, long coiled-coil
`XP_057767091.1`	Pfam	`PF05911`	FPP	Coiled-coil	689	812	1.4e-184	616.6	Filament-like plant protein, long coiled-coil

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057911106.1
TGGTTAATGGCTATACATACATTATATATTTGCAAGTTGCTGTAGTGTTGCTCTGCTCTCTCAGAAGCGATCGGAAGCCGTTCCAGCTTCAAGGTATTGAAGAAGAAGAAAAAAACCACCACAGCTCTGTTCTCGGAAAGAGAACAATTCTTCAAATAACAACATAGGTTAACGAGAAGAGGAGCATGAAACTGAGGTACATCAACTTGTGAGATAGAGCCACAACATAACATTGCACAAGTAACAGGTGAAGGTTGAAC...

XM_057911107.1
TGGTTAATGGCTATACATACATTATATATTTGCAAGTTGCTGTAGTGTTGCTCTGCTCTCTCAGAAGCGATCGGAAGCCGCTTCAAGGTATTGAAGAAGAAGAAAAAAACCACCACAGCTCTGTTCTCGGAAAGAGAACAATTCTTCAAATAACAACATAGGTTAACGAGAAGAGGAGCATGAAACTGAGGTACATCAACTTGTGAGATAGAGCCACAACATAACATTGCACAAGTAACAGGTGAAGGTTGAACAGGAAG...

CDS

3 records

下载 CDS FASTA

LOC130987548
ATGGCAGGGTGGGAGAAAGGCAAGAGGGACGCCATTTCTTTGAAGAAAGACCTCGACAACACGCTACAGCAGAAAACTGCTTCGGAAGAGAGAATAAGGCACTTGGATGCGGCGCTCAAGGAATGTATGCAGCAGCTACACTATGTGCGAGAAGATCAAGAGAGACGAATTCACGGAGCTGTGATCAAGACATCAGAAGAGTTTGAGAAGCAACGGACTGCTCTGAACGGGAAGCTAGCAGAAACTGGCAAGAGGATTGC...

Protein

3 records

下载 Protein FASTA

XP_057767089.1
MAGWEKGKRDAISLKKDLDNTLQQKTASEERIRHLDAALKECMQQLHYVREDQERRIHGAVIKTSEEFEKQRTALNGKLAETGKRIARLESENSQLRNSLSSKEKTIQDLSKYTTQVEADLHALVLRVDSSEKEKASLSYEFRVLEKELDIRNEETEFNRRTADIAQKQHQESMKKVAKLESECQRLRLLVRRRLPGPAALTKMKNEVEMLGKDQAGTRRKRSNYYMISSADFHVDDAAAETRINLLTEQLLRMEEQNRS...

XP_057767090.1
MAGWEKGKRDAISLKKDLDNTLQQKTASEERIRHLDAALKECMQQLHYVREDQERRIHGAVIKTSEEFEKQRTALNGKLAETGKRIARLESENSQLRNSLSSKEKTIQDLSKYTTQVEADLHALVLRVDSSEKEKASLSYEFRVLEKELDIRNEETEFNRRTADIAQKQHQESMKKVAKLESECQRLRLLVRRRLPGPAALTKMKNEVEMLGKDQAGTRRKRSNYYMISSADFHVDDAAAETRINLLTEQLLRMEEQNRS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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