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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr06G002030

染色体: Chr06 坐标: 26435263-26443783 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr06G002030
名称SmilChr06G002030
描述probable inactive histone-lysine N-methyltransferase SUVR2
染色体 / SeqIDChr06 / NC_080392.1
坐标与链方向26435263 - 26443783 / -

ID 对照

NCBI Gene IDLOC130987551
GeneID130987551
locus_tag-
NCBI NameLOC130987551
原始查询SmilChr06G002030

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述probable inactive histone-lysine N-methyltransferase SUVR2
产物probable inactive histone-lysine N-methyltransferase SUVR2
ArabidopsisAT5G43990 (SUVR2)
SET-domain containing protein lysine methyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:834422]
identity=40.7; qcov=0.718; evalue=8.55e-141; confidence=medium
RiceOs02g0621100 (OsSET10)
-
identity=44.7; qcov=0.706; evalue=4.7e-163; confidence=medium
GOGO:0005515 (protein binding); GO:0005634 (nucleus); GO:0008270 (zinc ion binding); GO:0034968 (GO:0034968); GO:0042054 (histone methyltransferase activity)
KEGG-
PfamPF00856 (SET); PF05033 (Pre-SET); PF10440 (WIYLD)
InterPro-
eggNOG-
NRGeneID:130987551

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057767093.1
2 Chromosome 染色体 0.20000 XP_057767093.1
3 Nucleoplasm 核质 0.20000 XP_057767093.1
4 Centromere 着丝粒 0.00000 XP_057767093.1
5 Chromatin 染色质 0.00000 XP_057767093.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr6:26438664 G A EMS_canonical_SNV CDS_variant 3 A21,B28,D5
Chr6:26439240 G A EMS_canonical_SNV CDS_variant 2 B85,B94
Chr6:26439905 G A EMS_canonical_SNV CDS_variant 4 B10,B114,B65,C49
Chr6:26439916 C T EMS_canonical_SNV CDS_variant 3 B123,C43,D3
Chr6:26440805 C T EMS_canonical_SNV CDS_variant 1 C42
Chr6:26441038 C T EMS_canonical_SNV CDS_variant 3 B114,B65,C49
Chr6:26441099 G A EMS_canonical_SNV CDS_variant 1 C49
Chr6:26441208 C T EMS_canonical_SNV CDS_variant 1 C48

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767093.1
866 aa
N
1
433
866
WIYLD
Pre-SET
SET
C
PF10440 WIYLD 5-62 aa PF05033 Pre-SET 545-689 aa PF00856 SET 709-831 aa
XP_057767094.1
866 aa
N
1
433
866
WIYLD
Pre-SET
SET
C
PF10440 WIYLD 5-62 aa PF05033 Pre-SET 541-685 aa PF00856 SET 705-827 aa
XP_057767095.1
866 aa
N
1
433
866
WIYLD
Pre-SET
SET
C
PF10440 WIYLD 5-62 aa PF05033 Pre-SET 545-689 aa PF00856 SET 709-831 aa
XP_057767097.1
866 aa
N
1
433
866
WIYLD
Pre-SET
SET
C
PF10440 WIYLD 5-62 aa PF05033 Pre-SET 545-689 aa PF00856 SET 709-831 aa
XP_057767098.1
865 aa
N
1
432
865
WIYLD
Pre-SET
SET
C
PF10440 WIYLD 5-62 aa PF05033 Pre-SET 544-688 aa PF00856 SET 708-830 aa
XP_057767099.1
865 aa
N
1
432
865
WIYLD
Pre-SET
SET
C
PF10440 WIYLD 5-62 aa PF05033 Pre-SET 544-688 aa PF00856 SET 708-830 aa
XP_057767100.1
863 aa
N
1
432
863
WIYLD
Pre-SET
SET
C
PF10440 WIYLD 5-62 aa PF05033 Pre-SET 542-686 aa PF00856 SET 706-828 aa
XP_057767101.1
863 aa
N
1
432
863
WIYLD
Pre-SET
SET
C
PF10440 WIYLD 5-62 aa PF05033 Pre-SET 542-686 aa PF00856 SET 706-828 aa
XP_057767102.1
863 aa
N
1
432
863
WIYLD
Pre-SET
SET
C
PF10440 WIYLD 5-62 aa PF05033 Pre-SET 542-686 aa PF00856 SET 706-828 aa
XP_057767103.1
862 aa
N
1
431
862
WIYLD
Pre-SET
SET
C
PF10440 WIYLD 5-62 aa PF05033 Pre-SET 541-685 aa PF00856 SET 705-827 aa
XP_057767104.1
862 aa
N
1
431
862
WIYLD
Pre-SET
SET
C
PF10440 WIYLD 5-62 aa PF05033 Pre-SET 541-685 aa PF00856 SET 705-827 aa
XP_057767105.1
862 aa
N
1
431
862
WIYLD
Pre-SET
SET
C
PF10440 WIYLD 5-62 aa PF05033 Pre-SET 541-685 aa PF00856 SET 705-827 aa
XP_057767106.1
862 aa
N
1
431
862
WIYLD
Pre-SET
SET
C
PF10440 WIYLD 5-62 aa PF05033 Pre-SET 541-685 aa PF00856 SET 705-827 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057767093.1 Pfam PF10440 WIYLD Domain 5 62 8.9e-23 80.6 Ubiquitin-binding WIYLD domain
XP_057767093.1 Pfam PF05033 Pre-SET Family 545 689 9.8e-13 49.3 Pre-SET motif
XP_057767093.1 Pfam PF00856 SET Family 709 831 5.5e-18 66.1 SET domain
XP_057767094.1 Pfam PF10440 WIYLD Domain 5 62 9.4e-23 80.5 Ubiquitin-binding WIYLD domain
XP_057767094.1 Pfam PF05033 Pre-SET Family 541 685 1.1e-12 49.1 Pre-SET motif
XP_057767094.1 Pfam PF00856 SET Family 705 827 5.5e-18 66.1 SET domain
XP_057767095.1 Pfam PF10440 WIYLD Domain 5 62 8.9e-23 80.6 Ubiquitin-binding WIYLD domain
XP_057767095.1 Pfam PF05033 Pre-SET Family 545 689 9.8e-13 49.3 Pre-SET motif
XP_057767095.1 Pfam PF00856 SET Family 709 831 5.5e-18 66.1 SET domain
XP_057767097.1 Pfam PF10440 WIYLD Domain 5 62 8.9e-23 80.6 Ubiquitin-binding WIYLD domain
XP_057767097.1 Pfam PF05033 Pre-SET Family 545 689 9.8e-13 49.3 Pre-SET motif
XP_057767097.1 Pfam PF00856 SET Family 709 831 5.5e-18 66.1 SET domain
XP_057767098.1 Pfam PF10440 WIYLD Domain 5 62 9.4e-23 80.5 Ubiquitin-binding WIYLD domain
XP_057767098.1 Pfam PF05033 Pre-SET Family 544 688 9.8e-13 49.3 Pre-SET motif
XP_057767098.1 Pfam PF00856 SET Family 708 830 5.5e-18 66.1 SET domain
XP_057767099.1 Pfam PF10440 WIYLD Domain 5 62 9.4e-23 80.5 Ubiquitin-binding WIYLD domain
XP_057767099.1 Pfam PF05033 Pre-SET Family 544 688 9.8e-13 49.3 Pre-SET motif
XP_057767099.1 Pfam PF00856 SET Family 708 830 5.5e-18 66.1 SET domain
XP_057767100.1 Pfam PF10440 WIYLD Domain 5 62 8.8e-23 80.6 Ubiquitin-binding WIYLD domain
XP_057767100.1 Pfam PF05033 Pre-SET Family 542 686 9.7e-13 49.3 Pre-SET motif
XP_057767100.1 Pfam PF00856 SET Family 706 828 5.4e-18 66.1 SET domain
XP_057767101.1 Pfam PF10440 WIYLD Domain 5 62 8.8e-23 80.6 Ubiquitin-binding WIYLD domain
XP_057767101.1 Pfam PF05033 Pre-SET Family 542 686 9.7e-13 49.3 Pre-SET motif
XP_057767101.1 Pfam PF00856 SET Family 706 828 5.4e-18 66.1 SET domain
XP_057767102.1 Pfam PF10440 WIYLD Domain 5 62 8.8e-23 80.6 Ubiquitin-binding WIYLD domain
XP_057767102.1 Pfam PF05033 Pre-SET Family 542 686 9.7e-13 49.3 Pre-SET motif
XP_057767102.1 Pfam PF00856 SET Family 706 828 5.4e-18 66.1 SET domain
XP_057767103.1 Pfam PF10440 WIYLD Domain 5 62 9.3e-23 80.5 Ubiquitin-binding WIYLD domain
XP_057767103.1 Pfam PF05033 Pre-SET Family 541 685 9.7e-13 49.3 Pre-SET motif
XP_057767103.1 Pfam PF00856 SET Family 705 827 5.4e-18 66.1 SET domain
XP_057767104.1 Pfam PF10440 WIYLD Domain 5 62 9.3e-23 80.5 Ubiquitin-binding WIYLD domain
XP_057767104.1 Pfam PF05033 Pre-SET Family 541 685 9.7e-13 49.3 Pre-SET motif
XP_057767104.1 Pfam PF00856 SET Family 705 827 5.4e-18 66.1 SET domain
XP_057767105.1 Pfam PF10440 WIYLD Domain 5 62 9.3e-23 80.5 Ubiquitin-binding WIYLD domain
XP_057767105.1 Pfam PF05033 Pre-SET Family 541 685 9.7e-13 49.3 Pre-SET motif
XP_057767105.1 Pfam PF00856 SET Family 705 827 5.4e-18 66.1 SET domain
XP_057767106.1 Pfam PF10440 WIYLD Domain 5 62 9.3e-23 80.5 Ubiquitin-binding WIYLD domain
XP_057767106.1 Pfam PF05033 Pre-SET Family 541 685 9.7e-13 49.3 Pre-SET motif
XP_057767106.1 Pfam PF00856 SET Family 705 827 5.4e-18 66.1 SET domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

13 records

下载 cDNA FASTA
XM_057911120.1
AAAAACAAGGTGAATTTGACAATTTTTTTAATTTTAACTTTTTAAAATTTTATTTACTGTATTTCCTTTTTGAATGCACAGCAGCCTGGTGCTGTGCACAGCAGGGGATCTTTTTCCGATAAAACACCCATCATTCTTCTTAAACCCTAGTTCTCCTTCTCCCTCCTGCATCTTCAATTCTAGAGTTTGGGGACACAATAGCTTCAAGAAAAGGCTACTCTTATCTAGGGGTGAGCATAAACGACCGCAGACCGAAAAAT...
XM_057911116.1
TACTGTATTTCCTTTTTGAATGCACAGCAGCCTGGTGCTGTGCACAGCAGGGGATCTTTTTCCGATAAAACACCCATCATTCTTCTTAAACCCTAGTTCTCCTTCTCCCTCCTGCATCTTCAATTCTAGAGTTTGGGGACACAATAGCTTCAAGAAAAGGCTACTCTTATCTAGGGGTGAGCATAAACGACCGCAGACCGAAAAATTAACTGAACCGAAAGCTCAAGGATTATTGGTGCATTGCAAGTTCACGAGCCTGA...

CDS

13 records

下载 CDS FASTA
LOC130987551
ATGAATGGCAAGGAGACAAAAGTTAGAGTTGCCAATGCCTTTCGTGCTATGAAGGGTATTGGAATCTCTGAAGCTATGGTGAAACCAGTTTTAAAGAATTTGCTAATAGTGTATGAAAAAAATTGGGAGCTTATAGAAGAGGAGAATTATAGGGCGCTTGCTGATGCTATATTTGAGAAACAAGAAGCAGAAGCAAACGAGCATTCAAAGAAGACTGTGGACAGGGAAGCTGCTGACCGTTCCAAGAAGAATACTGAAAG...
LOC130987551
ATGAATGGCAAGGAGACAAAAGTTAGAGTTGCCAATGCCTTTCGTGCTATGAAGGGTATTGGAATCTCTGAAGCTATGGTGAAACCAGTTTTAAAGAATTTGCTAATAGTGTATGAAAAAAATTGGGAGCTTATAGAAGAGGAGAATTATAGGGCGCTTGCTGATGCTATATTTGAGAAACAAGAAGCAGAAGCAAACGAGCATTCAAAGAAGACTGTGGACAGGGAAGCTGCTGACCGTTCCAAGAAGAATACTGAAAG...

Protein

13 records

下载 Protein FASTA
XP_057767093.1
MNGKETKVRVANAFRAMKGIGISEAMVKPVLKNLLIVYEKNWELIEEENYRALADAIFEKQEAEVSDANEHSKKTVDREAADRSKKNTEKRLEERAQAAEELIRPLKRVRHRYQDGQSTSSAAATDSGPTMPLVIPKDEPTEVTELPNSCPPKVNASQGLVASPQPSAENESTDPQLLSKIKGKQPISPESLVAREVCDPCQPNSVTSPSHAMKLRDRGNQSLCPQTSTGEKSSLPHSSPQATSNKQWKIVRGSVPVPKQ...
XP_057767094.1
MNGKETKVRVANAFRAMKGIGISEAMVKPVLKNLLIVYEKNWELIEEENYRALADAIFEKQEAEANEHSKKTVDREAADRSKKNTERLEERAQAAEELIRPLKRVRHRYQDGQSTSSAAATDSGPTMPLVIPKDEPTEVTELPNSCPPKVNASQGLVASPQPSAENESTDPQLLSKIKGKQPISPESLVAREVCDPCQPNSVTSPSHAMKLRDRGNQSLCPQTSTGEKSSLPHSSPQATSNKQWKIVRGSVPVPKQKRVS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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