当前解析结果
SmilChr06G002046| 统一新 Gene ID | SmilChr06G002046 |
|---|---|
| 名称 | SmilChr06G002046 |
| 描述 | DNA polymerase alpha catalytic subunit |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 26855398 - 26865809 / + |
| NCBI Gene ID | LOC130990097 |
|---|---|
| GeneID | 130990097 |
| locus_tag | - |
| NCBI Name | LOC130990097 |
| 原始查询 | SmilChr06G002046 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DNA polymerase alpha catalytic subunit |
| 产物 | DNA polymerase alpha catalytic subunit |
| Arabidopsis | AT5G67100 (ICU2)DNA-directed DNA polymerase [Source:NCBI gene (formerly Entrezgene);Acc:836845] identity=57.8; qcov=1.01; evalue=0; confidence=high |
| Rice | Os01g0868300 (OSPOLA)- identity=61.4; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0003682 (chromatin binding); GO:0003688 (DNA replication origin binding); GO:0003697 (single-stranded DNA binding); GO:0003887 (DNA-directed DNA polymerase activity); GO:0005658 (alpha DNA polymerase:primase complex); GO:0006260 (DNA replication); GO:0006272 (leading strand elongation); GO:0006273 (lagging strand elongation); GO:0017076 (purine nucleotide binding); GO:0019103 (pyrimidine nucleotide binding); GO:1902975 (mitotic DNA replication initiation) |
| KEGG | smil03030 (DNA replication - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00136 (DNA_pol_B); PF03104 (DNA_pol_B_exo1); PF08996 (zf-DNA_Pol); PF12254 (DNA_pol_alpha_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990097 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057770285.1 |
| 2 | Nucleoplasm | 核质 | 0.20000 | XP_057770285.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057770285.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057770285.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057770285.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:26855571 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr6:26855626 |
CCG |
C |
2bp_deletion | frameshift_variant | 1 | C70 |
Chr6:26855626 |
CCG |
C |
2bp_deletion | CDS_variant | 1 | C70 |
Chr6:26855772 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B40,B76 |
Chr6:26856662 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C46 |
Chr6:26857524 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr6:26858709 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B12 |
Chr6:26858795 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B45 |
Chr6:26859731 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C18 |
Chr6:26860287 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C77 |
Chr6:26861251 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A10,D1 |
Chr6:26862185 |
GAC |
G |
2bp_deletion | frameshift_variant | 9 | B104,B136,B16,B20,B40,B55,C64,C66,C84 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057770285.1PF12254
DNA_pol_alpha_N 26-94 aa
PF03104
DNA_pol_B_exo1 557-809 aa
PF00136
DNA_pol_B 874-1332 aa
PF08996
zf-DNA_Pol 1371-1574 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770285.1 |
Pfam | PF12254 |
DNA_pol_alpha_N | Family | 26 | 94 | 2.9e-21 | 76.0 | DNA polymerase alpha subunit p180 N terminal |
XP_057770285.1 |
Pfam | PF03104 |
DNA_pol_B_exo1 | Family | 557 | 809 | 1.2e-29 | 104.2 | DNA polymerase family B, exonuclease domain |
XP_057770285.1 |
Pfam | PF00136 |
DNA_pol_B | Family | 874 | 1332 | 3.4e-124 | 415.8 | DNA polymerase family B |
XP_057770285.1 |
Pfam | PF08996 |
zf-DNA_Pol | Domain | 1371 | 1574 | 5.5e-39 | 134.5 | DNA Polymerase alpha zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。