当前解析结果
SmilChr06G002052| 统一新 Gene ID | SmilChr06G002052 |
|---|---|
| 名称 | SmilChr06G002052 |
| 描述 | elongator complex protein 1 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 26984449 - 26991031 / - |
| NCBI Gene ID | LOC130988954 |
|---|---|
| GeneID | 130988954 |
| locus_tag | - |
| NCBI Name | LOC130988954 |
| 原始查询 | SmilChr06G002052 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | elongator complex protein 1 |
| 产物 | elongator complex protein 1 |
| Arabidopsis | AT5G13680 (ABO1)IKI3 family protein [Source:NCBI gene (formerly Entrezgene);Acc:831213] identity=55.4; qcov=1; evalue=0; confidence=high |
| Rice | Os07g0563700 (CUL1)- identity=51.6; qcov=1.02; evalue=0; confidence=high |
| GO | GO:0000049 (tRNA binding); GO:0002926 (tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation); GO:0005515 (protein binding); GO:0005829 (cytosol); GO:0033588 (elongator holoenzyme complex) |
| KEGG | - |
| Pfam | PF04762 (Beta-prop_ELP1_1st); PF23797 (Beta-prop_ELP1_2nd); PF23878 (TPR_ELP1); PF23925 (A-sol_ELP1); PF23936 (HB_ELP1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988954 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057768929.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057768929.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057768929.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057768929.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057768929.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:26984715 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A10,C18,D1 |
Chr6:26984926 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B47 |
Chr6:26984933 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A16,C26 |
Chr6:26984935 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A10,D1 |
Chr6:26986128 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr6:26986321 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr6:26986545 |
CA |
C |
1bp_deletion | frameshift_variant | 7 | B101,B12,C43,C74,C77,D10,D7 |
Chr6:26986547 |
A |
AG |
1bp_insertion | frameshift_variant | 7 | B101,B12,C43,C74,C77,D10,D7 |
Chr6:26986792 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr6:26987257 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C74,D10 |
Chr6:26987321 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A10,D1 |
Chr6:26987448 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057768929.1PF04762
Beta-prop_ELP1_1st 1-159 aa
PF04762
Beta-prop_ELP1_1st 177-332 aa
PF23797
Beta-prop_ELP1_2nd 366-688 aa
PF23925
A-sol_ELP1 713-934 aa
PF23878
TPR_ELP1 943-1104 aa
PF23936
HB_ELP1 1118-1272 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057768929.1 |
Pfam | PF04762 |
Beta-prop_ELP1_1st | Repeat | 1 | 159 | 2.8e-66 | 224.6 | ELP1 first N-terminal beta-propeller |
XP_057768929.1 |
Pfam | PF04762 |
Beta-prop_ELP1_1st | Repeat | 177 | 332 | 2.8e-66 | 224.6 | ELP1 first N-terminal beta-propeller |
XP_057768929.1 |
Pfam | PF23797 |
Beta-prop_ELP1_2nd | Repeat | 366 | 688 | 1.6e-44 | 153.6 | ELP1 N-terminal second beta-propeller |
XP_057768929.1 |
Pfam | PF23925 |
A-sol_ELP1 | Repeat | 713 | 934 | 2.4e-41 | 142.5 | ELP1 alpha-solenoid |
XP_057768929.1 |
Pfam | PF23878 |
TPR_ELP1 | Repeat | 943 | 1104 | 8e-23 | 82.3 | ELP1 TPR domain |
XP_057768929.1 |
Pfam | PF23936 |
HB_ELP1 | Domain | 1118 | 1272 | 9.4e-13 | 48.8 | ELP1 three-helix bundle |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。