当前解析结果
SmilChr06G002067| 统一新 Gene ID | SmilChr06G002067 |
|---|---|
| 名称 | SmilChr06G002067 |
| 描述 | uncharacterized SmilChr06G002067 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 27230396 - 27233523 / - |
| NCBI Gene ID | LOC130988965 |
|---|---|
| GeneID | 130988965 |
| locus_tag | - |
| NCBI Name | LOC130988965 |
| 原始查询 | SmilChr06G002067 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein [Source:NCBI gene (formerly Entrezgene);Acc:829443]; symbol=AT4G33060; hit=AT4G33060; species=arabidopsis; confidence=weak |
| 产物 | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein [Source:NCBI gene (formerly Entrezgene);Acc:829443]; symbol=AT4G33060; hit=AT4G33060; species=arabidopsis; confidence=weak |
| Arabidopsis | AT4G33060 (AT4G33060)Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein [Source:NCBI gene (formerly Entrezgene);Acc:829443] identity=62.9; qcov=0.255; evalue=6.35e-08; confidence=weak |
| Rice | Os01g0582400 (OsCYP57)- identity=57.1; qcov=0.255; evalue=7.89e-07; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988965 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057768939.1 |
| 2 | Mitochondrion | 线粒体 | 0.40000 | XP_057768937.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057768939.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057768937.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057768937.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:27231735 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B68,C36,C56,C65 |
Chr6:27231747 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A14,B108,B13,B15,C39 |
Chr6:27232103 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B16,B82,C51 |
Chr6:27232131 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B32,B36 |
Chr6:27232146 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | D4,D9 |
Chr6:27232160 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B73,C81 |
Chr6:27232178 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | B38,B39 |
Chr6:27232178 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B38,B39 |
Chr6:27232339 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B121,C80 |
Chr6:27232349 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B97,C44 |
Chr6:27232373 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B119,B3,C24,C46 |
Chr6:27232382 |
C |
CA |
1bp_insertion | frameshift_variant | 60 | A10,A2,A23,A8,B102,B103,B110,B112,B115,B118,B12,B125,B13,B136,B15,B19,B2,B22,B23,B30,B34,B41,B42,B43,B52,B56,B57,B61,B63,B64,B70,B81,B82,B86,B89,B9,B93,C10,C11,C14,C17,C22,C27,C29,C30,C31,C39,C41,C43,C48,C49,C51,C52,C58,C6,C64,C65,C69,C72,D7 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。