当前解析结果
SmilChr06G002085| 统一新 Gene ID | SmilChr06G002085 |
|---|---|
| 名称 | SmilChr06G002085 |
| 描述 | uncharacterized SmilChr06G002085 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 27480763 - 27481551 / + |
| NCBI Gene ID | LOC130990710 |
|---|---|
| GeneID | 130990710 |
| locus_tag | - |
| NCBI Name | LOC130990710 |
| 原始查询 | SmilChr06G002085 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629]; symbol=AT2G01050; hit=AT2G01050; species=arabidopsis; confidence=low |
| 产物 | zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629]; symbol=AT2G01050; hit=AT2G01050; species=arabidopsis; confidence=low |
| Arabidopsis | AT2G01050 (AT2G01050)zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629] identity=26.1; qcov=0.981; evalue=3.65e-22; confidence=low |
| Rice | Os09g0268800- identity=27.7; qcov=0.385; evalue=2.23e-07; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990710 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057770922.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057770922.1 |
| 3 | Cytoplasmic granule | 细胞质颗粒 | 0.20000 | XP_057770922.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057770922.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057770922.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:27480806 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A15,B40,B76,B9,C38 |
Chr6:27480808 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B27,B57,B75 |
Chr6:27480812 |
G |
A |
EMS_canonical_SNV | stop_gained | 95 | A1,A13,A16,A18,A20,A23,A8,A9,B100,B102,B103,B105,B109,B117,B119,B121,B122,B123,B127,B128,B129,B131,B133,B137,B18,B21,B31,B35,B36,B4,B49,B5,B51,B54,B55,B56,B59,B6,B62,B68,B71,B73,B74,B76,B79,B81,B85,B87,B88,B9,B90,B92,B94,B96,B99,C1,C11,C13,C18,C21,C22,C23,C26,C28,C29,C30,C33,C34,C37,C40,C42,C47,C50,C54,C58,C60,C61,C65,C67,C69,C7,C74,C75,C76,C78,C81,C83,C84,C85,C86,C9,D11,D2,D5,D8 |
Chr6:27480824 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,D10 |
Chr6:27480825 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
Chr6:27480862 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B12 |
Chr6:27480875 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B27,B57,B75 |
Chr6:27480878 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr6:27480888 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B23,D10,D3 |
Chr6:27480901 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B27,B57,B75 |
Chr6:27480913 |
GGT |
G |
2bp_deletion | frameshift_variant | 1 | D10 |
Chr6:27480913 |
GGT |
G |
2bp_deletion | CDS_variant | 1 | D10 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。