Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G002103`

染色体: Chr06 坐标: 28094562-28098971 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G002103`
名称	SmilChr06G002103
描述	B3 domain-containing protein Os01g0234100-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	28094562 - 28098971 / `+`

ID 对照

NCBI Gene ID	`LOC130988983`
GeneID	`130988983`
locus_tag	`-`
NCBI Name	`LOC130988983`
原始查询	`SmilChr06G002103`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	B3 domain-containing protein Os01g0234100-like
产物	B3 domain-containing protein Os01g0234100-like
Arabidopsis	`AT3G19184` (AT3G19184) AP2/B3-like transcriptional factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:3768753] identity=49.1; qcov=0.227; evalue=2.87e-30; confidence=weak
Rice	`Os01g0234100` - identity=36.5; qcov=0.785; evalue=9.94e-82; confidence=medium
GO	GO:0003677 (DNA binding)
KEGG	-
Pfam	PF02362 (B3)
InterPro	-
eggNOG	-
NR	GeneID:130988983

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057768954.1`
2	Chromosome	染色体	0.00000	`XP_057768954.1`
3	Centromere	着丝粒	0.00000	`XP_057768954.1`
4	Chromatin	染色质	0.00000	`XP_057768954.1`
5	Telomere	端粒	0.00000	`XP_057768954.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:28095086`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C43
`Chr6:28095358`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A4
`Chr6:28096262`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B80
`Chr6:28096361`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C52
`Chr6:28096618`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B118,B52
`Chr6:28096696`	`TAA`	`T`	2bp_deletion	frameshift_variant	1	B139
`Chr6:28096696`	`TAA`	`T`	2bp_deletion	CDS_variant	1	B139
`Chr6:28098606`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C86

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768954.1

485 aa

242

485

PF02362 B3 132-222 aa

XP_057768955.1

475 aa

238

475

PF02362 B3 122-212 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768954.1`	Pfam	`PF02362`	B3	Domain	132	222	2.3e-17	63.5	B3 DNA binding domain
`XP_057768955.1`	Pfam	`PF02362`	B3	Domain	122	212	2.2e-17	63.5	B3 DNA binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057912971.1
CAAGAATCCATTTTCTAAGTCAACATGGATCTTTAACTAAATTAACTAAATAAAAGGACGGACATGCGACCTTGTAATATCTTTACTCGTGTAATTAAGAATAAGATAGGTGTATGGTGTTAGTGATATATGTAAAAACGCAAAATTTGTTCTAAACTCATAAACTTTGAATTTGTGTAGTTTAATTGAAGTTGAATCTGAAAGGAAACGATATATAATTCCGCAATCTCTAACTGATTAATGAAAGGTGAGAGCAATTA...

XM_057912972.1
TCCATTTTCTAAGTCAACATGGATCTTTAACTAAATTAACTAAATAAAAGGACGGACATGCGACCTTGTAATATCTTTACTCGTGTAATTAAGAATAAGATAGGTGTATGGTGTTAGTGATATATGTAAAAACGCAAAATTTGTTCTAAACTCATAAACTTTGAATTTGTGTAGTTTAATTGAAGTTGAATCTGAAAGGAAACGATATATAATTCCGCAATCTCTAACTGATTAATGAAAGGTGAGAGCAATTAAATTCG...

CDS

2 records

下载 CDS FASTA

LOC130988983
ATGAAGCTGAAAATAGTCCACCAGAATCAGGAGAGCCGCGGCGGGGGTGAAGAGCAAGCGATGAAGACGGAGGATGCGGAGGAGCCGGCGAAGGACAGCTTTTCGCCTCCGGAGCCTTCGCCGGTTTCTGCTTCTCACCCTCTGCTTGTTTCCGGCAAGAGGAAGAGGAAGCCCAAGGAGCTGATCGACGAGGTTTCATCGATTATTGTGCGGAGGAGGAGAAAGAGTTTCTCTTCGTCCAAATCGCAAGATGATGTTCC...

LOC130988983
ATGAAGCTGAAAATAGTCCACCAGAATCAGGAGAGCCGCGGCGGGGGTGAAGAGCAAGCGATGAAGACGGAGGATGCGGAGGAGCCGGCGAAGGACAGCTTTTCGCCTCCGGAGCCTTCGCCGGGCAAGAGGAAGAGGAAGCCCAAGGAGCTGATCGACGAGGTTTCATCGATTATTGTGCGGAGGAGGAGAAAGAGTTTCTCTTCGTCCAAATCGCAAGATGATGTTCCTGATAGCGGAGGAAGATCGCGGAGTAAAGG...

Protein

2 records

下载 Protein FASTA

XP_057768954.1
MKLKIVHQNQESRGGGEEQAMKTEDAEEPAKDSFSPPEPSPVSASHPLLVSGKRKRKPKELIDEVSSIIVRRRRKSFSSSKSQDDVPDSGGRSRSKGDAKGGGPGSTAQIKSPTMIRAEEFMLSLSNDQPSFLKSLVRSHVASCFWMGLPGPFCKIHLPGNDTEVILEDENGEKFPIKYIANKTGLSAGWRKFVAGNKLVEGDVLIFQLIGPCKFKVYTIRANDLTEVDGALSLLILDSQTKQNDAEGTVDAQSTKKRRR...

XP_057768955.1
MKLKIVHQNQESRGGGEEQAMKTEDAEEPAKDSFSPPEPSPGKRKRKPKELIDEVSSIIVRRRRKSFSSSKSQDDVPDSGGRSRSKGDAKGGGPGSTAQIKSPTMIRAEEFMLSLSNDQPSFLKSLVRSHVASCFWMGLPGPFCKIHLPGNDTEVILEDENGEKFPIKYIANKTGLSAGWRKFVAGNKLVEGDVLIFQLIGPCKFKVYTIRANDLTEVDGALSLLILDSQTKQNDAEGTVDAQSTKKRRRKSLPMTVVQK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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