Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G002167`

染色体: Chr06 坐标: 29819440-29822903 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G002167`
名称	SmilChr06G002167
描述	uncharacterized SmilChr06G002167
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	29819440 - 29822903 / `+`

ID 对照

NCBI Gene ID	`LOC130989042`
GeneID	`130989042`
locus_tag	`-`
NCBI Name	`LOC130989042`
原始查询	`SmilChr06G002167`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:824220]; symbol=AT3G50560; hit=AT3G50560; species=arabidopsis; confidence=high
产物	NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:824220]; symbol=AT3G50560; hit=AT3G50560; species=arabidopsis; confidence=high
Arabidopsis	`AT3G50560` (AT3G50560) NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:824220] identity=64.6; qcov=0.974; evalue=2.06e-120; confidence=high
Rice	`Os08g0476300` (EIP11) - identity=58.2; qcov=1; evalue=3.81e-106; confidence=high
GO	-
KEGG	-
Pfam	PF00106 (adh_short); PF13561 (adh_short_C2)
InterPro	-
eggNOG	-
NR	GeneID:130989042

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.80000	`XP_057769019.1`
2	Mitochondrion	线粒体	0.40000	`XP_057769019.1`
3	Peroxisome	过氧化物酶体	0.40000	`XP_057769019.1`
4	Cytoplasm	细胞质	0.20000	`XP_057769019.1`
5	Mitochondrion matrix	线粒体基质	0.20000	`XP_057769019.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:29820367`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A3,B66,B98
`Chr6:29820485`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr6:29820500`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B106
`Chr6:29820543`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B10
`Chr6:29820543`	`TG`	`T`	1bp_deletion	CDS_variant	1	B10
`Chr6:29822648`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B12,C43

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769019.1

267 aa

134

267

adh_short

adh_short_C2

PF00106 adh_short 13-191 aa PF13561 adh_short_C2 23-200 aa

XP_057769020.1

267 aa

134

267

adh_short

adh_short_C2

PF00106 adh_short 13-191 aa PF13561 adh_short_C2 23-200 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769019.1`	Pfam	`PF00106`	adh_short	Domain	13	191	3.2e-29	102.5	short chain dehydrogenase
`XP_057769019.1`	Pfam	`PF13561`	adh_short_C2	Domain	23	200	1.4e-20	74.6	Enoyl-(Acyl carrier protein) reductase
`XP_057769020.1`	Pfam	`PF00106`	adh_short	Domain	13	191	3.2e-29	102.5	short chain dehydrogenase
`XP_057769020.1`	Pfam	`PF13561`	adh_short_C2	Domain	23	200	1.4e-20	74.6	Enoyl-(Acyl carrier protein) reductase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057913037.1
GTTGGGAGATGAAGCTAGTTTAACAGAGGGGATAATCATGGGAGCCAGACCCTGCTGTCGTTTTTGATGTTGATACCGAAAGAAGTTTCGAGAGAGAGAGAGAGAGAGGGTGCATTCACTGATTAGTTGAATGGATATATATGAGTAGGAACAGTGACAAAAGTCTATTGTTCAATCATCATCGACAGTATAGAATTAATACCACTGAATCTCCACTGGTAAGTAATCATTCGCAGCAAAAAGAGAAGAAAGAGAAACGA...

XM_057913036.1
AACAGAGGGGATAATCATGGGAGCCAGACCCTGCTGTCGTTTTTGATGTTGATACCGAAAGAAGTTTCGAGAGAGAGAGAGAGAGAGGGTGCATTCACTGATTAGTTGAATGGATATATATGAGTAGGAACAGTGACAAAAGTCTATTGTTCAATCATCATCGACAGTATAGAATTAATACCACTGAATCTCCACTGCGAGAGTGTGAAGATGCGAAGCATGGGCAGCTCGGCCTCGGCGAGGGGCATCGCGGCGATAGT...

CDS

2 records

下载 CDS FASTA

LOC130989042
ATGCGAAGCATGGGCAGCTCGGCCTCGGCGAGGGGCATCGCGGCGATAGTCGGCGTGGGTGCGAAGCTCGGGCGCTCCGTCGCCCGCAAATTCGCGCATGAAGGCTACACCGTGGCCATCCTGGCCCGCGATCTGGATAGGCTGTCGAGATTTGCGGACGAGATAGCTCGGGAGGAGAAGGCGCAAGTGTTCGCCATCAGAATCGACTGTTCAGAGTCTCGGAGCATAAAGGAGGCGTTCGAGGGCGTGCTCTCTCTGGG...

Protein

2 records

下载 Protein FASTA

XP_057769019.1
MRSMGSSASARGIAAIVGVGAKLGRSVARKFAHEGYTVAILARDLDRLSRFADEIAREEKAQVFAIRIDCSESRSIKEAFEGVLSLGFVEVLVYNAYHPVSWSPTAFADVRLDGFEKSLAVASVGAFHCAQQVIPGMVERGRGTILFTGCAASLNGIAGYPDLCCGKFAMRALSQCLAREFQPLGVHVAHVIIDGLIGAPAPPPPRGSVSSSPQQSQRWAASSSVEGEKGLILMDPDVVAQTYWQLHIQDRSTWTQEIDL...

XP_057769020.1
MRSMGSSASARGIAAIVGVGAKLGRSVARKFAHEGYTVAILARDLDRLSRFADEIAREEKAQVFAIRIDCSESRSIKEAFEGVLSLGFVEVLVYNAYHPVSWSPTAFADVRLDGFEKSLAVASVGAFHCAQQVIPGMVERGRGTILFTGCAASLNGIAGYPDLCCGKFAMRALSQCLAREFQPLGVHVAHVIIDGLIGAPAPPPPRGSVSSSPQQSQRWAASSSVEGEKGLILMDPDVVAQTYWQLHIQDRSTWTQEIDL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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